P36049 | SWISS-MODEL Repository

P36049 (EBP2_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

rRNA-processing protein EBP2 UniProtKB InterPro STRING Interactive Modelling

427 aa; Sequence (Fasta) ; 1 identical sequence: Saccharomyces cerevisiae: N1P0N4

It is possible new templates exist for this target since these models were created.

However, an attempt to improve models for this target was made on 2025-02-21. The outcome - only low quality models could be built.

Available Structures

18 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)	8v84 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX43; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36080; P36105; P38061; P38779; P38789; P38805; P40007; P40078; P40693; P40991; P43586; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q06511; Q07915; Q08235; Q08962; Q12389; Q12522; Q12690;	196-346	100	1×GDP; 1×MG; 2×ZN;
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60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)	8v83 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX43; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36080; P36105; P38061; P38779; P38789; P38805; P40007; P40078; P40693; P40991; P43586; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q06511; Q07915; Q08235; Q08962; Q12522; Q12690;	196-346	100	2×ZN;
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State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	6elz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	196-340	100	1×ZN;
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State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model	7r7a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	196-340	100	2×ZN;
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Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae	7ohr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	196-340	100	1×ZN;
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State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model	7nac PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04031; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	196-340	100	2×ZN; 1×SAH;
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60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)	8v87 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12389; Q12522; Q12690;	196-340	100	1×ADP; 2×MG; 1×GDP; 1×K; 2×ZN;
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State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14455; P04456; P05737; P05738; P05740; P05743; P05744; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P10962; P14120; P14126; P17076; P25582; P26784; P33201; P35178; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	196-327	100
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Structure of the Brx1 and Ebp2 complex	5z1g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q08235;	195-293	100	1×SO4;
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State E2 nucleolar 60S ribosomal biogenesis intermediate - L1 stalk local model	7r7c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0CX43; P25582; P40078; P40991; P43586; Q02892; Q04660; Q08235; Q08962;	245-340	100
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Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…	7ohv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P49167; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12024; Q12522; Q12690;	196-279	100.0	1×ZN;
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Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)	5z3g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36105; P38061; P38779; P38805; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q08235; Q12522; Q12690;	195-276	100
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State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region	7r6k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05745; P05748; P17076; P25582; P39744; P40078; P40991; P43586; P87262; Q04031; Q04660; Q07896; Q08235; Q08962;	214-294	100.0
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State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P17076; P26784; P35178; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q04660; Q08235; Q12690;	196-261	100
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Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut dow…	7ohw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P38805; P40007; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q08235; Q12522; Q12690;	196-261	100.0	1×ZN;
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State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	6em1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14455; P05737; P05738; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690;	196-261	100	2×ZN;
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State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690;	196-261	100
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Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate	8e5t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05744; P05745; P05748; P0CX23; P0CX49; P10664; P10962; P17076; P26784; P35178; P36105; P38061; P38779; P39744; P40693; P53261; P53927; Q02326; Q03532; Q04660; Q08235; Q12176; Q12690;	196-257	100	33×MG; 1×ZN;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	5z1g.1.A	monomer	0.60	195-293		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P36049 (EBP2_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

rRNA-processing protein EBP2 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

18 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

rRNA-processing protein EBP2 UniProtKB InterPro STRING Interactive Modelling