P36594 (RPB1_SCHPO) Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)

DNA-directed RNA polymerase II subunit rpb1 UniProtKBInterProSTRINGInteractive Modelling

1752 aa; Sequence (Fasta)

Sequence Features

 69Zinc 1
 72Zinc 1
 79Zinc 1
 82Zinc 1
 109Zinc 2
 112Zinc 2
 150Zinc 2
 175Zinc 2
 487Magnesium 1; catalytic
 487Magnesium 2; shared with RPB2
 489Magnesium 1; catalytic
 489Magnesium 2; shared with RPB2
 491Magnesium 1; catalytic
 14-346RNA polymerase Rpb1, domain 1
IPR007080PF04997
 348-513RNA polymerase, alpha subunit
IPR000722PF00623
 516-675RNA polymerase Rpb1, domain 3
IPR007066PF04983
 701-806RNA polymerase Rpb1, domain 4
IPR007083PF05000
 813-1402RNA polymerase Rpb1, domain 5
IPR007081PF04998
 879-1059RNA polymerase Rpb1, domain 6
IPR007075PF04992
 1144-1280RNA polymerase Rpb1, domain 7
IPR007073PF04990
 1579-1592RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1593-1606RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1607-1620RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1621-1634RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1628-1641RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1635-1648RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1642-1655RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1649-1662RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1656-1669RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1663-1676RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1670-1683RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1677-1690RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1684-1697RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1691-1704RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1698-1711RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1705-1718RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1712-1725RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1726-1739RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1740-1752RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
RNA Polymerase II from Schizosaccharomyces pombe Heteromer
O13877; O14459; O74635; O74825; P36595; P37382; P48011; P87123; Q02061; Q09191; Q92399;
ZN;MG;3h0g2-1497
Cryo-EM structure of the Mediator-RNAPII complex Heteromer
O13877; O13964; O14010; O14198; O14459; O60104; O74635; O74825; O94376; O94646; P36595; P37382; P48011; P87123; P87306; Q02061; Q09191; Q10317; Q10477; Q92399; Q9P6Q0; Q9P7Y4; Q9US45; Q9USH1;
5u0s2-1497
PCE1 guanylyltransferase bound to SER2/SER5 phosphorylated RNA pol II CTD Heteromer
P40997;
GMP;4pz61736-1743