SMTL ID : 8qsz.1

Structure of s. pombe RNA polymerase II in complex with DSIF and Rat1/Rai1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain C: C.90, C.92, Y.95, C.96, K.98, C.99 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.90, C:C.92, C:C.96, C:C.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carrique, L. et al., DSIF factor Spt5 coordinates transcription, maturation and exoribonucleolysis of RNA polymerase II transcripts. To Be Published

Release Date

2024-10-23

Peptides

DNA-directed RNA polymerase II subunit rpb1: A
DNA-directed RNA polymerase II subunit RPB2: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerases I, II, and III subunit RPABC1: D
DNA-directed RNA polymerases I, II, and III subunit RPABC2: E
DNA-directed RNA polymerase II subunit rpb7: F
DNA-directed RNA polymerases I, II, and III subunit RPABC3: G
DNA-directed RNA polymerase II subunit RPB9,RBP9: H
DNA-directed RNA polymerases I, II, and III subunit RPABC5: I
DNA-directed RNA polymerase II subunit RPB11: J
DNA-directed RNA polymerases I, II, and III subunit RPABC4: K
Transcription elongation factor spt5: L
5'-3' exoribonuclease 2: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
G

G
H

H
I

I
J

J
K

K
L

L
Y

P
X

DNA-directed RNA polymerase II subunit rpb1

DNA-directed RNA polymerase II subunit RPB2

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase II subunit rpb7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9,RBP9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11

DNA-directed RNA polymerases I, II, and III subunit RPABC4

Transcription elongation factor spt5

5'-3' exoribonuclease 2

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