P77933 (DPOL_THEKO) Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)(Pyrococcus kodakaraensis (strain KOD1))

DNA polymerase UniProtKBInterProSTRINGInteractive Modelling

1671 aa; Sequence (Fasta)

Sequence Features

 788-802
 1403-1406
 22-129DNA-directed DNA polymerase, family B, exonuclease domain
IPR006133PF03104
 130-278DNA-directed DNA polymerase, family B, exonuclease domain
IPR006133PF03104
 623-702Homing endonuclease, LAGLIDADG
IPR004860PF14528
 762-853DNA-directed DNA polymerase, family B, multifunctional domain
IPR006134PF00136
 975-1123DNA polymerase II intein domain IV
IPR041005PF18714
 1128-1183Homing endonuclease, LAGLIDADG
IPR004860PF14528
 1222-1281Homing endonuclease, LAGLIDADG
IPR004860PF14528
 1388-1643DNA-directed DNA polymerase, family B, multifunctional domain
IPR006134PF00136

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
'Crystal structure of family B DNA polymerase from hyperthermophilic archaeon pyrococcus kodakara...monomer 1wns1-1655
'KOD DNA pol in a closed ternary complex with 7-deaza-7-(2-(2-hydroxyethoxy)-N-(prop-2-yn-1-yl)ac...monomer MG;HHZ;MN;EDO;SO4;NO3;6q4t1-1654
Closed, ternary structure of KOD DNA polymerasemonomer GOL;MG;MN;DTP;EDO;5omf1-1653
KOD Polymerase in binary complex with dsDNAmonomer MG;EDO;NCO;4k8z1-1653
Crystal structure of intein homing endonuclease IImonomer GOL;SO4;2cw8852-1388
Crystal structure of intein homing endonuclease IImonomer SO4;2cw7852-1388

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer -3.345vu8.1.A1381-1656
97.25