P77933 (DPOL_THEKO) Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)(Pyrococcus kodakaraensis (strain KOD1))
DNA polymerase UniProtKBInterProSTRINGInteractive Modelling
1671 aa; Sequence (Fasta)
It is possible new templates exist for this target since these models were created.
Sequence Features
| 788-802 | |||
| 1403-1406 | |||
| 22-129 | DNA-directed DNA polymerase, family B, exonuclease domain IPR006133PF03104 | ||
| 130-278 | DNA-directed DNA polymerase, family B, exonuclease domain IPR006133PF03104 | ||
| 623-702 | Homing endonuclease, LAGLIDADG IPR004860PF14528 | ||
| 762-853 | DNA-directed DNA polymerase, family B, multifunctional domain IPR006134PF00136 | ||
| 975-1123 | DNA polymerase II intein domain IV IPR041005PF18714 | ||
| 1128-1183 | Homing endonuclease, LAGLIDADG IPR004860PF14528 | ||
| 1222-1281 | Homing endonuclease, LAGLIDADG IPR004860PF14528 | ||
| 1388-1643 | DNA-directed DNA polymerase, family B, multifunctional domain IPR006134PF00136 |
Sequence Alignments
Experimental structures
| Description | Oligo-state | Ligands | Structure | Range | Download | Assess |
|---|---|---|---|---|---|---|
| 'Crystal structure of family B DNA polymerase from hyperthermophilic archaeon pyrococcus kodakara... | monomer | 1wns | ||||
| 'KOD DNA pol in a closed ternary complex with 7-deaza-7-(2-(2-hydroxyethoxy)-N-(prop-2-yn-1-yl)ac... | monomer | 2×MG; 1×HHZ; 1×MN; 7×EDO; 1×SO4; 2×NO3; | 6q4t | |||
| Closed, ternary structure of KOD DNA polymerase | monomer | 3×GOL; 1×MG; 2×MN; 1×DTP; 4×EDO; | 5omf | |||
| KOD Polymerase in binary complex with dsDNA | monomer | 1×MG; 2×EDO; 1×NCO; | 4k8z | |||
| Crystal structure of intein homing endonuclease II | monomer | 4×GOL; 8×SO4; | 2cw8 | |||
| Crystal structure of intein homing endonuclease II | monomer | 3×SO4; | 2cw7 |
Homology models
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) | Report | Download | Assess |
|---|---|---|---|---|---|---|---|---|
| monomer | -3.34 | 5vu8.1.A | 97.25 |