P98161 | SWISS-MODEL Repository

It is possible new templates exist for this target since these models were created.

However, an attempt to improve models for this target was made on 2020-06-28. The outcome - only low quality models could be built.

		13	L -> Q (in PKD1) VAR_011030
		36	P -> H (in dbSNP:rs560049593) VAR_058759 dbSNP
		61	P -> L (in PKD1; unknown pathological significance; dbSNP:rs886038369) VAR_058760 dbSNP
		75	S -> F (in PKD1) VAR_011031
		87	L -> M VAR_058761
		88	A -> V (in dbSNP:rs958271752) VAR_012452 dbSNP
		97	D -> G (in PKD1) VAR_064380
		99	S -> I (in PKD1; unknown pathological significance; nearly abolishes expression at the cell membrane) VAR_058762
		139	W -> C (in PKD1) VAR_011032
		164	Q -> R (in PKD1) VAR_058763
		210	C -> G (in PKD1) VAR_058764
		324	R -> L (in PKD1; dbSNP:rs199476099) VAR_010085 dbSNP
		325	Y -> C (in PKD1) VAR_068024
		381	G -> C (in PKD1) VAR_058765
		436	C -> R (in PKD1; dbSNP:rs1555458892) VAR_064381 dbSNP
		442	A -> P (in PKD1) VAR_064382
		508	C -> R (in PKD1; dbSNP:rs58598099) VAR_058766 dbSNP
		572	P -> S (in dbSNP:rs149022148) VAR_058767 dbSNP
		594	F -> Y (in PKD1) VAR_058768
		611	R -> W (in PKD1; dbSNP:rs1555458413) VAR_068025 dbSNP
		690	V -> D (in PKD1) VAR_058769
		698	Y -> D (in PKD1) VAR_068026
		727	L -> P (in PKD1; dbSNP:rs1616940) VAR_064383 dbSNP
		727	L -> R (in PKD1) VAR_064384
		738	P -> R VAR_058770
		739	R -> Q (in dbSNP:rs40433) VAR_058771 dbSNP
		845	L -> S (in PKD1; dbSNP:rs199476100) VAR_010086 dbSNP
		950	L -> P (in dbSNP:rs2369063) VAR_056696 dbSNP
		967	W -> R (in PKD1) VAR_012453
		987	Q -> H (in PKD1; dbSNP:rs1266492292) VAR_058772 dbSNP
		1092	M -> T (in dbSNP:rs2549677) VAR_056697 dbSNP
		1114	L -> R (in dbSNP:rs241573) VAR_056698 dbSNP
		1166	G -> S (in PKD1; dbSNP:rs573566419) VAR_011033 dbSNP
		1168	P -> S (in dbSNP:rs146887330) VAR_058773 dbSNP
		1206	V -> G (in PKD1) VAR_068027
		1240	Missing (in PKD1) VAR_058774
		1242	T -> M (in PKD1; unknown pathological significance; dbSNP:rs1033550407) VAR_058775 dbSNP
		1340	R -> W (in PKD1; dbSNP:rs143690392) VAR_058776 dbSNP
		1399	W -> R (in dbSNP:rs116092985) VAR_010087 dbSNP
		1516	A -> T (in dbSNP:rs148164067) VAR_058777 dbSNP
		1557	R -> P (in dbSNP:rs241572) VAR_056699 dbSNP
		1649	T -> M (in dbSNP:rs761106434) VAR_058778 dbSNP
		1667	T -> P (in PKD1) VAR_058779
		1684	S -> L (in dbSNP:rs139520275) VAR_058780 dbSNP
		1734	T -> K (in dbSNP:rs241571) VAR_056700 dbSNP
		1786	P -> L (rare polymorphism; dbSNP:rs151176070) VAR_010088 dbSNP
		1811	E -> K (in PKD1; dbSNP:rs778028644) VAR_058781 dbSNP
		1871	A -> T (in dbSNP:rs144137200) VAR_058782 dbSNP
		1926	A -> V (in dbSNP:rs754890213) VAR_058783 dbSNP
		1943	V -> I (in dbSNP:rs137978188) VAR_058784 dbSNP
		1952	G -> D VAR_058785
		1956	V -> E (in PKD1) VAR_011034
		1995	R -> H (in dbSNP:rs752388015) VAR_011036 dbSNP
		2083	T -> I (in PKD1; dbSNP:rs1383930225) VAR_058786 dbSNP
		2092	Y -> C (in PKD1) VAR_058787
		2185	Y -> D (in PKD1) VAR_058788
		2200	R -> C (in PKD1; dbSNP:rs140869992) VAR_058789 dbSNP
		2250	T -> M (in PKD1; unknown pathological significance; dbSNP:rs139971481) VAR_011038 dbSNP
		2260	Missing (in PKD1) VAR_058790
		2329	R -> W (in PKD1; unknown pathological significance; dbSNP:rs200433577) VAR_011039 dbSNP
		2336	Y -> D (in PKD1) VAR_011040
		2370	C -> R (in PKD1) VAR_058791
		2373	C -> Y (in PKD1) VAR_058792
		2379	Y -> C (in PKD1) VAR_011041
		2391	G -> D (in PKD1) VAR_064385
		2392	R -> P (in PKD1) VAR_012454
		2408	R -> C (in PKD1; dbSNP:rs538769374) VAR_011042 dbSNP
		2421	Missing (in PKD1) VAR_058793
		2422	T -> K (in PKD1; dbSNP:rs1555453210) VAR_058794 dbSNP
		2423	S -> F (in PKD1) VAR_012455
		2434	R -> W (in PKD1; dbSNP:rs151257298) VAR_064386 dbSNP
		2443	G -> GG (in PKD1) VAR_011043
		2471	P -> L (in PKD1; dbSNP:rs1161298621) VAR_012456 dbSNP
		2515	R -> Q (in dbSNP:rs2432404) VAR_056701 dbSNP
		2519	Q -> L (in PKD1; unknown pathological significance) VAR_012457
		2534	S -> G (in dbSNP:rs3874655) VAR_056702 dbSNP
		2546	H -> Y (in PKD1; dbSNP:rs200037070) VAR_064387 dbSNP
		2548	E -> Q (in dbSNP:rs28369051) VAR_012458 dbSNP
		2569	S -> C (in PKD1; dbSNP:rs758896945) VAR_064388 dbSNP
		2579	Missing (in PKD1; unknown pathological significance) VAR_012459
		2582	T -> M (in dbSNP:rs2432405) VAR_012460 dbSNP
		2604	D -> N (in dbSNP:rs778565182) VAR_011044 dbSNP
		2613	Missing (in PKD1; unknown pathological significance) VAR_012461
		2638	H -> R (in PKD1; dbSNP:rs9936785) VAR_012462 dbSNP
		2646	I -> T (in PKD1; dbSNP:rs374500158) VAR_064389 dbSNP
		2649	T -> I (in PKD1; unknown pathological significance; dbSNP:rs1490043027) VAR_012463 dbSNP
		2674	P -> S (in dbSNP:rs144557371) VAR_011045 dbSNP
		2696	L -> R (in PKD1; dbSNP:rs201238819) VAR_012464 dbSNP
		2708	T -> M (in dbSNP:rs147350387) VAR_011046 dbSNP
		2734	P -> T (in dbSNP:rs150568356) VAR_011047 dbSNP
		2735	Q -> L (in dbSNP:rs141717814) VAR_011048 dbSNP
		2746	R -> P (in dbSNP:rs1800569) VAR_014918 dbSNP
		2752	A -> D (in PKD1) VAR_011049
		2760	M -> T (associated with PKD1; dbSNP:rs1800568) VAR_005533 dbSNP
		2761	R -> P (associated with PKD1) VAR_058795
		2763	L -> V (in PKD1) VAR_005535
		2764	M -> T (associated with PKD1) VAR_005536
		2765	R -> C (in dbSNP:rs144979397) VAR_011051 dbSNP
		2765	R -> RILMR (in PKD1) VAR_011050
		2767	R -> C (in PKD1) VAR_068028
		2768	V -> M (in PKD1; associated with S-2858; dbSNP:rs1456510041) VAR_011052 dbSNP
		2771	E -> K (in PKD1; does not undergo autoproteolytic cleavage; dbSNP:rs1057518897) VAR_011053 dbSNP
		2782	V -> M (in dbSNP:rs151089809) VAR_011054 dbSNP
		2785	G -> D (in PKD1) VAR_058796
		2791	R -> Q (in a patient with polycystic kidney disease; does not affect autoproteolytic cleavage at the GPS domain; dbSNP:rs367746233) VAR_005537 dbSNP
		2802	P -> L (in PKD1; dbSNP:rs534112936) VAR_058797 dbSNP
		2814	G -> R (in PKD1; unknown pathological significance; dbSNP:rs149151043) VAR_011055 dbSNP
		2816	L -> P (in PKD1) VAR_011056
		2826	I -> T (in PKD1) VAR_005538
		2858	G -> S (in PKD1; associated with M-2768; dbSNP:rs755522953) VAR_011057 dbSNP
		2888	R -> G VAR_011058
		2889	S -> R (in PKD1; dbSNP:rs752447240) VAR_064390 dbSNP
		2905	V -> I (in dbSNP:rs147788838) VAR_011059 dbSNP
		2921	H -> P (in PKD1; does not undergo autoproteolytic cleavage) VAR_011060
		2958	S -> L (in dbSNP:rs750780241) VAR_058798 dbSNP
		2966	E -> D (in dbSNP:rs13337123) VAR_011061 dbSNP
		2972	D -> N (in dbSNP:rs150189496) VAR_012465 dbSNP
		2977	T -> N VAR_058799
		2978	Missing (in PKD1; unknown pathological significance) VAR_012466
		2985	R -> G (in PKD1; dbSNP:rs373952574) VAR_012467 dbSNP
		2993	L -> P (in PKD1; does not undergo autoproteolytic cleavage; dbSNP:rs1555450487) VAR_010089 dbSNP
		2995	L -> R (in PKD1) VAR_068029
		3005	Q -> E (in dbSNP:rs1063401) VAR_056703 dbSNP
		3008	V -> L (in PKD1) VAR_005539
		3008	V -> M (in dbSNP:rs117896488) VAR_058800 dbSNP
		3016	Q -> R (in PKD1; does not undergo autoproteolytic cleavage) VAR_010090
		3023	M -> V (in dbSNP:rs17135779) VAR_056704 dbSNP
		3039	R -> C (in PKD1; dbSNP:rs200522524) VAR_012468 dbSNP
		3057	V -> M (in dbSNP:rs778055216) VAR_058802 dbSNP
		3066	F -> L (in PKD1; dbSNP:rs9925969) VAR_011063 dbSNP
		3138	V -> M (in PKD1; unknown pathological significance; dbSNP:rs1358566538) VAR_058803 dbSNP
		3139	G -> V VAR_011064
		3154	L -> P (in PKD1) VAR_064391
		3167	I -> F (in PKD1; dbSNP:rs139945204) VAR_058804 dbSNP
		3188	Missing (in PKD1) VAR_058805
		3193	P -> L VAR_011065
		3247	R -> H (in PKD1; dbSNP:rs140791671) VAR_013838 dbSNP
		3285	V -> I (in PKD1; dbSNP:rs201780393) VAR_012469 dbSNP
		3311	H -> R (in dbSNP:rs1242837732) VAR_012470 dbSNP
		3355	P -> L (in PKD1; dbSNP:rs781263445) VAR_058806 dbSNP
		3375	V -> M (in PKD1; dbSNP:rs371283948) VAR_005541 dbSNP
		3382	T -> M (in PKD1; dbSNP:rs776463508) VAR_013839 dbSNP
		3435	R -> Q (in dbSNP:rs140189010) VAR_058807 dbSNP
		3510	T -> M (in dbSNP:rs45478794) VAR_010091 dbSNP
		3511	L -> V (in PKD1; unknown pathological significance; dbSNP:rs141946034) VAR_010092 dbSNP
		3512	A -> V (in dbSNP:rs34197769) VAR_011066 dbSNP
		3560	G -> R (in PKD1; dbSNP:rs79000340) VAR_012471 dbSNP
		3562	S -> N VAR_010093
		3602	G -> S (in PKD1; dbSNP:rs781492044) VAR_058808 dbSNP
		3603	W -> R (in PKD1) VAR_064392
		3632	E -> D (in PKD1; dbSNP:rs1416373452) VAR_005542 dbSNP
		3649	P -> L (in PKD1) VAR_058809
		3651	G -> S (in PKD1) VAR_068030
		3678	M -> T (in PKD1) VAR_005543
		3682	L -> P (in PKD1) VAR_058810
		3719	R -> Q (in PKD1; dbSNP:rs1555446576) VAR_011067 dbSNP
		3726	W -> S (in PKD1; unknown pathological significance) VAR_058811
		3750	R -> Q (in PKD1; dbSNP:rs1327414405) VAR_064393 dbSNP
		3751	Q -> R (in PKD1) VAR_058812
		3753	R -> W (in PKD1; dbSNP:rs1167476946) VAR_011068 dbSNP
		3815	D -> N (in PKD1) VAR_011069
		3852	L -> P (in PKD1) VAR_011070
		3954	A -> P (in PKD1; unknown pathological significance) VAR_058813
		3996	F -> FLLF (in PKD1) VAR_010094
		4032	G -> D (in PKD1; dbSNP:rs142768096) VAR_005545 dbSNP
		4045	I -> V (in dbSNP:rs10960) VAR_005546 dbSNP
		4058	V -> A VAR_005547
		4059	A -> V (in dbSNP:rs3209986) VAR_010095 dbSNP
		4102	G -> E (in dbSNP:rs1306483854) VAR_058814 dbSNP
		4106	L -> P VAR_058815
		4124	P -> S (in dbSNP:rs1309138642) VAR_058816 dbSNP
		4132	Missing (in PKD1) VAR_011071
		4136	R -> G (in PKD1) VAR_010096
		4146	V -> I (in dbSNP:rs148478410) VAR_058817 dbSNP
		4150	R -> C (in PKD1; dbSNP:rs1282668884) VAR_068031 dbSNP
		4154	R -> C (in PKD1; dbSNP:rs115538130) VAR_010097 dbSNP
		4155	F -> V (in PKD1) VAR_058818
		4190	S -> F (in dbSNP:rs547854563) VAR_010098 dbSNP
		4225	Q -> P (in PKD1) VAR_010099
		4255	P -> S (in PKD1) VAR_058819
		4276	R -> W (in PKD1; dbSNP:rs114251396) VAR_010100 dbSNP
		3075-3095	Helical
		3278-3298	Helical
		3324-3344	Helical
		3560-3580	Helical
		3583-3603	Helical
		3666-3686	Helical
		3902-3922	Helical
		3936-3956	Helical
		3985-4005	Helical
		4028-4048	Helical
		4091-4110	Helical
		3048-3049	Cleavage; by autolysis
		436-530
		508-522
		640-653
		647-665
		660-669
		1992-1993	FT -> L (in PKD1) VAR_011035
		2220-2224	Missing (in PKD1) VAR_011037
		3012-3017	Missing (in PKD1) VAR_011062
		3027-3039	Missing (in PKD1) VAR_058801
		3748-3752	Missing (in PKD1) VAR_005544
		71-126	Leucine-rich repeat IPR001611 PF13855
		180-252	Carbohydrate-binding WSC IPR002889 PF01822
		281-344	PKD domain IPR000601 PF00801
		426-531	C-type lectin-like IPR001304 PF00059
		856-921	PKD domain IPR000601 PF00801
		1024-1116	PKD domain IPR000601 PF00801
		1134-1201	PKD domain IPR000601 PF00801
		1222-1284	PKD domain IPR000601 PF00801
		1303-1369	PKD domain IPR000601 PF00801
		1386-1455	PKD domain IPR000601 PF00801
		1476-1537	PKD domain IPR000601 PF00801
		1553-1621	PKD domain IPR000601 PF00801
		1638-1707	PKD domain IPR000601 PF00801
		1723-1792	PKD domain IPR000601 PF00801
		1813-1877	PKD domain IPR000601 PF00801
		1893-1961	PKD domain IPR000601 PF00801
		1981-2050	PKD domain IPR000601 PF00801
		2068-2132	PKD domain IPR000601 PF00801
		2171-2614	PKD/REJ-like domain IPR002859 PF02010
		3120-3223	PLAT/LH2 domain IPR001024 PF01477
		3712-4112	Polycystin cation channel, PKD1/PKD2 IPR013122 PF08016

Experimental structures

Description	Oligo-state	Ligands	Structure	Range	Download	Assess
Structure of the human PKD1/PKD2 complex	Heteromer Q13563;		6a70	3075-4120
PKD DOMAIN 1 FROM HUMAN POLYCYSTEIN-1	monomer		1b4r	275-354

Homology models

Oligo-state	Ligands	QMEAN	Template	Range	Seq id (%)	Download	Assess
monomer		-3.12	5hdh.1.A	72-171	34.00	PDB Report
monomer		-3.89	4caj.1.A	405-531	27.64	PDB Report

Homology models built on isoform sequence

Isoform #	Oligo-state	QMEAN	Template	Range	Seq id (%)
3	monomer	-3.62	3b2d.1.B	72-177	33.33
2	monomer	-4.42	6t9n.1.B	3652-4118	22.15
3	monomer	-4.14	4caj.1.B	405-531	27.64
3	monomer	-2.94	1b4r.1.A	275-354	100.00

P98161 (PKD1_HUMAN) Homo sapiens (Human)

Polycystin-1 UniProtKB InterPro STRING Interactive Modelling

Homology Model

Experimental structures

Homology models

Homology models built on isoform sequence

P98161 (PKD1_HUMAN) Homo sapiens (Human)

Polycystin-1 UniProtKBInterProSTRINGInteractive Modelling

Homology Model

Model Quality Estimate

Sequence Features

Sequence Alignments

Experimental structures

Homology models

Homology models built on isoform sequence

Background

Resolution

Polycystin-1 UniProtKB InterPro STRING Interactive Modelling