SMTL ID : 8z6b.1

Structure of Polycystin-1/Polycystin-2 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-3-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain B: R.359, D.412, L.413, N.414, Y.431, Q.576 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.413 Hydrogen bonds: B:R.359, B:D.412 NAG.2: 3 residues within 4Å: Chain B: N.367, K.381, E.382 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.381, B:E.382, B:E.382 NAG.3: 3 residues within 4Å: Chain C: N.367, K.381, E.382 No protein-ligand interaction detected (PLIP) NAG.4: 5 residues within 4Å: Chain C: R.359, D.412, L.413, N.414, Q.576 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.413 Hydrogen bonds: C:R.359, C:D.412 NAG.6: 3 residues within 4Å: Chain D: N.367, K.381, E.382 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.367, D:E.382, D:E.382 NAG.7: 5 residues within 4Å: Chain D: R.359, D.412, N.414, F.584, N.586 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.359, D:R.359, D:N.414, D:N.586

1 x PA8: 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHATE(Non-covalent)

PA8.5: 12 residues within 4Å: Chain A: L.1053, W.1054, G.1055, A.1056, L.1059 Chain D: M.629, L.680, F.708, L.712, N.713, F.715, L.716 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.1053

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, M. et al., Structures of polycystin1/2 complex. To Be Published

Release Date

2025-04-23

Peptides

Polycystin-1: A
Polycystin-2: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Polycystin-1

Polycystin-2

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