Q01299 (POLG_TBEVH) Tick-borne encephalitis virus (strain Hypr) (TBEV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3414 aa; Sequence (Fasta)

Molecule Processing
Capsid protein C
Protein prM
Peptide pr
Small envelope protein M
Envelope protein E
Non-structural protein 1
Non-structural protein 2A
Serine protease subunit NS2B
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
RNA-directed RNA polymerase NS5

Sequence Features

 1543Charge relay system; for serine protease NS3 activity
 1567Charge relay system; for serine protease NS3 activity
 1627Charge relay system; for serine protease NS3 activity
 2572For 2'-O-MTase activity
 2657For 2'-O-MTase activity
 2694For 2'-O-MTase activity
 2730For 2'-O-MTase activity
 2950Zinc 1
 2954Zinc 1; via tele nitrogen
 2959Zinc 1
 2962Zinc 1
 3224Zinc 2; via tele nitrogen
 3240Zinc 2
 3359Zinc 2
 1949Involved in NS3 ATPase and RTPase activities
 1952Involved in NS3 ATPase and RTPase activities
 2524mRNA cap binding
 2527mRNA cap binding; via carbonyl oxygen
 2528mRNA cap binding
 2530mRNA cap binding; via carbonyl oxygen
 2535mRNA cap binding
 2539mRNA cap binding
 2572Essential for 2'-O-methyltransferase activity
 2657Essential for 2'-O-methyltransferase and N-7 methyltransferase activity
 2661mRNA cap binding
 2694Essential for 2'-O-methyltransferase activity
 2725mRNA cap binding
 2727mRNA cap binding
 2730Essential for 2'-O-methyltransferase activity
 99-119Helical
 243-260Helical
 262-280Helical
 728-748Helical
 756-776Helical
 1133-1153Helical
 1159-1179Helical
 1188-1208Helical
 1294-1314Helical
 1328-1348Helical
 1360-1377Helical
 1383-1403Helical
 1455-1475Helical
 2161-2181Helical
 2190-2210Helical
 2212-2232Helical
 2245-2265Helical; Note=Signal for NS4B
 2300-2320Helical
 2344-2364Helical
 2369-2389Helical
 2433-2453Helical
 2478-2498Helical
 1688-1695ATP
 96-97Cleavage; by viral protease NS3
 117-118Cleavage; by host signal peptidase
 205-206Cleavage; by host furin
 280-281Cleavage; by host signal peptidase
 776-777Cleavage; by host signal peptidase
 1128-1129Cleavage; by host
 1358-1359Cleavage; by viral protease NS3
 1489-1490Cleavage; by autolysis
 2110-2111Cleavage; by autolysis
 2236-2237Cleavage; by viral protease NS3
 2259-2260Cleavage; by host signal peptidase
 2511-2512Cleavage; by viral protease NS3
 283-310
 340-401
 340-396
 354-385
 372-401
 372-396
 466-570
 587-618
 780-791
 831-920
 955-1000
 1057-1106
 1068-1090
 1089-1093
 4-116Flavivirus capsid protein C
IPR001122PF01003
 133-202Flavivirus polyprotein propeptide
IPR002535PF01570
 282-581Flavivirus glycoprotein central and dimerisation domain
IPR011998PF00869
 584-673Flavivirus glycoprotein E, immunoglobulin-like domain
IPR027287PF02832
 779-1130Flavivirus non-structural protein NS1
IPR001157PF00948
 1141-1301Flavivirus non-structural protein NS2A
IPR000752PF01005
 1507-1658Flavivirus NS3, petidase S7
IPR001850PF00949
 1679-1824DEAD box, Flavivirus
IPR011492PF07652
 2114-2253Flavivirus non-structural protein NS4A
IPR000404PF01350
 2260-2503Flavivirus non-structural protein NS4B
IPR001528PF01349
 2566-2733Ribosomal RNA methyltransferase FtsJ domain
IPR002877PF01728
 2768-3401RNA-directed RNA polymerase, flavivirus
IPR000208PF00972

Sequence Alignments

Protein prM 118-280; PRO_0000405169

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
The cryo-EM structure of Tick-borne encephalitis virus complexed with Fab fragment of neutralizing … Heteromer
NAG;5o6v 207-277
The cryo-EM structure of Tick-borne encephalitis virus mature particle Heteromer
18×NAG;5o6a 207-277

Small envelope protein M 206-280; PRO_0000037795

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
The cryo-EM structure of Tick-borne encephalitis virus complexed with Fab fragment of neutralizing … Heteromer
NAG;5o6v 207-277
The cryo-EM structure of Tick-borne encephalitis virus mature particle Heteromer
18×NAG;5o6a 207-277

Envelope protein E 281-776; PRO_0000037796

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
The cryo-EM structure of Tick-borne encephalitis virus complexed with Fab fragment of neutralizing … Heteromer
NAG;5o6v 281-772
The cryo-EM structure of Tick-borne encephalitis virus mature particle Heteromer
18×NAG;5o6a 281-772

Serine protease NS3 1490-2110; PRO_0000037800

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer MN;-2.032whx.1.A1512-2110
45.75
monomer -1.935yw1.1.A1509-2110
47.56
monomer -2.902wv9.1.A1512-2109
47.05

RNA-directed RNA polymerase NS5 2512-3414; PRO_0000037803

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;-2.415tfr.1.A2517-3396
56.56
monomer ZN;-2.485ccv.3.A2517-3396
58.78