Q02388 (CO7A1_HUMAN) Homo sapiens (Human)

Collagen alpha-1(VII) chain UniProtKBInterProSTRINGInteractive Modelling

2944 aa; Sequence (Fasta) ; (Isoform 2; )

Sequence Features

Add
 2634Interchain
 2802Interchain
 2804Interchain
 119T -> P (in a breast cancer sample; somatic mutation) VAR_035740
 142K -> R (in RDEB; unknown pathological significance; may affect exon 3 splicing; dbSNP:rs121912856) VAR_001809 dbSNP
 595P -> L (in dbSNP:rs2228561) VAR_001810 dbSNP
 1120R -> K (in dbSNP:rs2228563) VAR_048766 dbSNP
 1277P -> L (in dbSNP:rs35761247) VAR_001811 dbSNP
 1347G -> R (in RDEB; localized type; mild; dbSNP:rs121912833) VAR_011160 dbSNP
 1364P -> T (in a breast cancer sample; somatic mutation) VAR_035741
 1366R -> W (in a breast cancer sample; somatic mutation; dbSNP:rs147089666) VAR_035742 dbSNP
 1519G -> D (in TBDN; dbSNP:rs121912835) VAR_011161 dbSNP
 1522G -> E (in DDEB; dbSNP:rs387906605) VAR_011162 dbSNP
 1557G -> R (in DDEB) VAR_001812
 1595G -> R (in NDNC8; dbSNP:rs121912840) VAR_015519 dbSNP
 1604G -> R (in RDEB; dbSNP:rs1560234201) VAR_011163 dbSNP
 1652G -> R (in RDEB; mitis type; dbSNP:rs1439299333) VAR_011164 dbSNP
 1703G -> E (in RDEB; dbSNP:rs770304825) VAR_011165 dbSNP
 1772R -> W (in RDEB; dbSNP:rs1032335328) VAR_011166 dbSNP
 1776G -> R (in DDEB) VAR_011167
 1782G -> R (in RDEB; mitis type; dbSNP:rs374718902) VAR_001813 dbSNP
 1791G -> E (in EBP; dbSNP:rs1575450640) VAR_011168 dbSNP
 1812G -> R (in RDEB) VAR_011169
 1815G -> R (in NDNC8; dbSNP:rs121912841) VAR_015520 dbSNP
 1845G -> R (in RDEB) VAR_064994
 1981K -> R (in RDEB; mild form) VAR_064995
 1982G -> W (in RDEB) VAR_001814
 2003G -> R (in DDEB; dbSNP:rs121912832) VAR_001815 dbSNP
 2006G -> A (in DDEB) VAR_011170
 2006G -> D (in DDEB; interferes with collagen VII folding and secretion; dbSNP:rs121912842) VAR_011171 dbSNP
 2008R -> C (in RDEB; dbSNP:rs1055680335) VAR_011172 dbSNP
 2008R -> G (in RDEB; dbSNP:rs1055680335) VAR_001816 dbSNP
 2009G -> R (in RDEB) VAR_011173
 2015G -> E (in DDEB; interferes with collagen VII folding and secretion; dbSNP:rs121912843) VAR_011174 dbSNP
 2025G -> A (in RDEB; mitis type; dbSNP:rs766931219) VAR_001817 dbSNP
 2028G -> A (in DDEB) VAR_011175
 2028G -> R (in DDEB and EBP; dbSNP:rs762162799) VAR_011176 dbSNP
 2031G -> S (in RDEB; severe phenotype; dbSNP:rs121912838) VAR_011177 dbSNP
 2034G -> R (in DDEB and EBDSC; interferes with collagen VII folding and secretion; dbSNP:rs121912844) VAR_001818 dbSNP
 2034G -> W (in DDEB) VAR_011178
 2037G -> E (in DDEB; dbSNP:rs121912846) VAR_011179 dbSNP
 2040G -> D (in DDEB) VAR_011180
 2040G -> S (in DDEB; dbSNP:rs121912829) VAR_001819 dbSNP
 2040G -> V (in DDEB) VAR_011181
 2043G -> R (in DDEB; dbSNP:rs121912836) VAR_001820 dbSNP
 2043G -> W (in DDEB; localized type; dbSNP:rs121912836) VAR_011182 dbSNP
 2046G -> V (in DDEB) VAR_011183
 2049G -> E (in RDEB) VAR_001821
 2055G -> E (in DDEB; dbSNP:rs1553854678) VAR_001822 dbSNP
 2063R -> W (in RDEB; dbSNP:rs121912849) VAR_001823 dbSNP
 2064G -> R (in DDEB; dbSNP:rs866061439) VAR_011184 dbSNP
 2069R -> C (in RDEB; dbSNP:rs121912855) VAR_064996 dbSNP
 2070G -> R (in DDEB) VAR_064997
 2073G -> D (in RDEB; mitis type) VAR_001825
 2076G -> D (in DDEB; also in recessive forms; dbSNP:rs121912850) VAR_001826 dbSNP
 2079G -> E (in DDEB) VAR_001827
 2079G -> R (in DDEB; associated with squamous cell carcinoma) VAR_011185
 2132G -> D (in RDEB; dbSNP:rs755669902) VAR_011186 dbSNP
 2192G -> S (in RDEB) VAR_011187
 2207G -> R (in DDEB) VAR_011188
 2221G -> A (in RDEB) VAR_064998
 2242G -> R (in EBP; dbSNP:rs121912837) VAR_001828 dbSNP
 2251G -> E (in TBDN; also found in isolated toenail dystrophy; dbSNP:rs121912834) VAR_011189 dbSNP
 2263G -> V (in RDEB) VAR_011190
 2287G -> R (in RDEB; also found in isolated toenail dystrophy; dbSNP:rs121912839) VAR_011191 dbSNP
 2296G -> E (in RDEB) VAR_064999
 2316G -> R (in RDEB) VAR_011192
 2348G -> R (in DDEB/RDEB; mild form) VAR_011193
 2351G -> R (in a patient with dystrophic epidermolysis bullosa; mitis type; dbSNP:rs1800013) VAR_001829 dbSNP
 2366G -> S (in RDEB; mitis type; dbSNP:rs1560204600) VAR_011194 dbSNP
 2369G -> S (in EBP) VAR_011195
 2429P -> L (in dbSNP:rs2229822) VAR_033786 dbSNP
 2557G -> R (in RDEB) VAR_065000
 2569G -> R (in RDEB; severe and mitis type) VAR_001830
 2575G -> R (in RDEB; dbSNP:rs760891216) VAR_001831 dbSNP
 2622R -> W (in RDEB; dbSNP:rs139318843) VAR_065001 dbSNP
 2623G -> C (in PR-DEB; dominant; dbSNP:rs121912831) VAR_001832 dbSNP
 2653G -> R (in RDEB; mitis type; dbSNP:rs121912851) VAR_001833 dbSNP
 2671G -> V (in RDEB) VAR_001834
 2674G -> D (in RDEB) VAR_011196
 2674G -> R (in RDEB; mitis type) VAR_001835
 2713G -> D (in DDEB; dbSNP:rs369591910) VAR_011197 dbSNP
 2713G -> R (in EBP) VAR_011198
 2740G -> A (in RDEB) VAR_011199
 2749G -> R (in RDEB; dbSNP:rs121912853) VAR_001836 dbSNP
 2775G -> S (in RDEB; mitis type; dbSNP:rs1333259313) VAR_011200 dbSNP
 2791R -> W (in DDEB; dbSNP:rs142566193) VAR_011201 dbSNP
 2798M -> K (in RDEB; dbSNP:rs121912828) VAR_001837 dbSNP
 2886-2887Reactive bond
 2876-2929
 2885-2912
 2904-2925
 38-205von Willebrand factor, type A
IPR002035PF00092
 233-317Fibronectin type III
IPR003961PF00041
 332-405Fibronectin type III
IPR003961PF00041
 427-487Fibronectin type III
IPR003961PF00041
 509-584Fibronectin type III
IPR003961PF00041
 600-675Fibronectin type III
IPR003961PF00041
 688-764Fibronectin type III
IPR003961PF00041
 779-853Fibronectin type III
IPR003961PF00041
 869-944Fibronectin type III
IPR003961PF00041
 1066-1224von Willebrand factor, type A
IPR002035PF00092
 1252-1309Collagen triple helix repeat
IPR008160PF01391
 1296-1354Collagen triple helix repeat
IPR008160PF01391
 1452-1504Collagen triple helix repeat
IPR008160PF01391
 1489-1547Collagen triple helix repeat
IPR008160PF01391
 2034-2092Collagen triple helix repeat
IPR008160PF01391
 2101-2157Collagen triple helix repeat
IPR008160PF01391
 2257-2316Collagen triple helix repeat
IPR008160PF01391
 2324-2372Collagen triple helix repeat
IPR008160PF01391
 2374-2429Collagen triple helix repeat
IPR008160PF01391
 2407-2464Collagen triple helix repeat
IPR008160PF01391
 2466-2522Collagen triple helix repeat
IPR008160PF01391
 2527-2581Collagen triple helix repeat
IPR008160PF01391
 2563-2621Collagen triple helix repeat
IPR008160PF01391
 2634-2677Collagen triple helix repeat
IPR008160PF01391
 2722-2782Collagen triple helix repeat
IPR008160PF01391
 2876-2929Pancreatic trypsin inhibitor Kunitz domain
IPR002223PF00014

Sequence Alignments

Homology models

Oligo-stateQMEANTemplateRangeSeq id (%)Ligands
monomer 0.88 6s4c.1.A1051-1237
79.47MG;
Assess
monomer -2.35 1fnf.1.A235-477
31.06
Assess
monomer -2.05 1fnf.1.A431-771
30.79
Assess
monomer -2.58 3t1w.1.A343-678
29.97
Assess
monomer -4.18 3t1w.1.A507-858
27.49
Assess
monomer -2.17 3r8q.1.A692-937
29.29
Assess
monomer -1.61 3r8q.1.A612-856
30.51
Assess
monomer -3.38 1fnh.1.A612-856
30.51
Assess
monomer -2.18 3r8q.1.A234-477
31.91
Assess
monomer -2.47 6mfa.1.A685-1049
27.40
Assess
monomer -2.18 3r8q.1.A505-755
29.17
Assess
monomer -3.63 5n47.3.B685-935
27.35
Assess
monomer -3.12 1fnh.1.A234-477
31.91
Assess
monomer -2.22 1fnh.1.A692-937
29.29
Assess
monomer -1.92 6xay.4.A782-1035
28.28
Assess
monomer -3.59 6mfa.1.A604-937
29.10
Assess
monomer -2.47 1fnf.1.A507-849
34.92
Assess
monomer -2.16 6mfa.1.A231-575
34.06
Assess
monomer -3.51 6mfa.1.A512-753
30.80
Assess
monomer -4.40 3t1w.1.A685-1028
26.81
Assess
monomer -4.20 1fnf.1.A685-1031
27.44
Assess
monomer -4.72 6tpw.1.A694-978
30.91
Assess
monomer -2.97 1fnf.1.A343-677
30.49
Assess
monomer -3.72 4yh7.1.A694-952
30.43
Assess

Homology models built on isoform sequence

IsoformOligo-stateLigandsQMEANTemplateRangeSeq id (%)
Isoform 2monomerMG;0.816s4c.1.A1051-1237
79.47
Assess
Isoform 2monomer-2.211fnf.1.A235-477
31.06
Assess
Isoform 2monomer-2.173r8q.1.A692-937
29.29
Assess
Isoform 2monomer-3.034gh7.1.B685-935
27.35
Assess
Isoform 2monomer-2.431fnf.1.A431-771
30.79
Assess
Isoform 2monomer-2.513t1w.1.A343-678
29.97
Assess
Isoform 2monomer-1.816xay.1.A782-1035
27.87
Assess
Isoform 2monomer-4.223t1w.1.A507-858
27.49
Assess
Isoform 2monomer-1.623r8q.1.A612-856
30.51
Assess
Isoform 2monomer-3.391fnh.1.A612-856
30.51
Assess
Isoform 2monomer-2.203r8q.1.A234-477
31.91
Assess
Isoform 2monomer-2.721fnh.1.A692-937
29.29
Assess
Isoform 2monomer-2.706mfa.1.A604-937
29.10
Assess
Isoform 2monomer-2.033r8q.1.A505-755
29.17
Assess
Isoform 2monomer-3.841fnh.1.A234-477
31.91
Assess
Isoform 2monomer-2.646mfa.1.A685-1049
27.40
Assess
Isoform 2monomer-4.573t1w.1.A685-1028
26.81
Assess
Isoform 2monomer-1.836mfa.1.A231-575
34.06
Assess
Isoform 2monomer-2.191fnf.1.A507-849
34.92
Assess
Isoform 2monomer-3.506mfa.1.A512-753
30.80
Assess
Isoform 2monomer-3.176tpw.1.A694-978
30.91
Assess
Isoform 2monomer-4.161fnf.1.A685-1031
27.44
Assess
Isoform 2monomer-3.916tpw.1.A235-589
33.53
Assess
Isoform 2monomer-3.934yh7.1.A694-952
30.43
Assess
Isoform 2monomer-2.801fnf.1.A343-677
30.49
Assess