Q02836 (POL_SIVG1) Simian immunodeficiency virus agmgrivet (isolate AGM gr-1) (SIV-agmgri)(Simian immunodeficiency virus African green monkey grivet)

Gag-Pol polyprotein UniProtKBInterProInteractive Modelling

1472 aa; Sequence (Fasta)

Molecule Processing
Matrix protein p17
Capsid protein p24
Nucleocapsid protein p7
p6-pol
Protease
Reverse transcriptase/ribonuclease H
p51 RT
p15
Integrase

Sequence Features

 529For protease activity; shared with dimeric partner
 719Magnesium; catalytic; for reverse transcriptase activity
 794Magnesium; catalytic; for reverse transcriptase activity
 795Magnesium; catalytic; for reverse transcriptase activity
 1052Magnesium; catalytic; for RNase H activity
 1087Magnesium; catalytic; for RNase H activity
 1107Magnesium; catalytic; for RNase H activity
 1158Magnesium; catalytic; for RNase H activity
 1233Magnesium; catalytic; for integrase activity
 1285Magnesium; catalytic; for integrase activity
 1010Essential for RT p66/p51 heterodimerization
 1023Essential for RT p66/p51 heterodimerization
 390-407CCHC-type 1
 411-428CCHC-type 2
 1172-1213Integrase-type
 1392-1439Integrase-type
 135-136Cleavage; by viral protease
 223-224Cis/trans isomerization of proline peptide bond; by human PPIA/CYPA
 366-367Cleavage; by viral protease
 432-433Cleavage; by viral protease
 504-505Cleavage; by viral protease
 607-608Cleavage; by viral protease
 1049-1050Cleavage; by viral protease
 1169-1170Cleavage; by viral protease
 4-134Immunodeficiency lentiviral matrix, N-terminal
IPR000071PF00540
 151-351Retroviral nucleocapsid protein Gag
IPR000721PF00607
 391-406Zinc finger, CCHC-type
IPR001878PF00098
 411-428Zinc finger, CCHC-type
IPR001878PF00098
 510-605Retropepsins
IPR018061PF00077
 672-842Reverse transcriptase domain
IPR000477PF00078
 860-912Reverse transcriptase thumb
IPR010661PF06817
 928-1028Reverse transcriptase connection
IPR010659PF06815
 1048-1165Ribonuclease H domain
IPR002156PF00075
 1177-1213Integrase, N-terminal zinc-binding domain
IPR003308PF02022
 1226-1314Integrase, catalytic core
IPR001584PF00665
 1394-1437Integrase, C-terminal, retroviral
IPR001037PF00552

Sequence Alignments

Capsid protein p24 136-366; PRO_0000306007

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.024xfx.1.C136-356
67.39
monomer -1.472m8l.1.B136-356
67.39
monomer -1.482m8n.1.A136-356
67.39

Reverse transcriptase/ribonuclease H 608-1169; PRO_0000306011

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer MN;-1.473nbp.1.A612-1166
62.19
monomer -2.322jle.1.B612-1038
62.28

p51 RT 608-1049; PRO_0000306012

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -2.322jle.1.B612-1038
62.28

Integrase 1170-1472; PRO_0000306014

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;MG;-1.203f9k.1.A1173-1370
62.00
monomer -2.741ex4.1.A1225-1439
66.96
monomer ZN;-1.555u1c.1.A1170-1438
64.29
monomer -1.825u1c.1.B1225-1438
64.29