Q06287 (NEP1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Ribosomal RNA small subunit methyltransferase NEP1 UniProtKBInterProSTRINGInteractive Modelling
It is possible new templates exist for this target since these models were created.
However, an attempt to improve models for this target was made on 2025-06-09. The outcome - failed for technical reasons.
Available Structures
15 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala) |
Heteromer O13516; P05756; P06367; P07280; P0C0W1; P0CX29; P0CX31; P0CX35; P0CX37; P0CX39; P0CX47; P0CX51; P0CX55; P15646; P25368; P25635; P26783; P26786; P32899; P33442; P34247; P35194; P35997; P38333; P38882; P39990; P40362; P41819; P42945; P47083; P53254; P53276; P53941; Q02931; Q04177; Q04217; Q04305; Q04500; Q05498; Q05946; Q06078; Q06506; Q06512; Q06679; Q08096; Q08492; Q08965; Q12035; Q12136; Q12220; Q12460; Q12499; Q3E7X9; Q99207; Q99216; | 100.0 | 2×ZN; | |||
| Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2) |
Heteromer O13516; P05756; P06367; P0CX29; P0CX51; P0CX55; P15646; P25368; P25586; P25635; P26783; P32899; P33750; P34247; P36144; P38333; P38882; P39990; P40055; P40362; P40470; P42945; P47083; P48589; P53254; P53276; P53941; Q02354; Q02931; Q04177; Q04305; Q04500; Q05022; Q05498; Q05946; Q06078; Q06506; Q06512; Q06679; Q08096; Q08492; Q08965; Q12035; Q12136; Q12220; Q12460; Q12499; Q3E7X9; Q99207; | 100.0 | 1×ZN; 1×GTP; 1×MG; | |||
| Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) |
Heteromer O13516; P0CX29; P0CX31; P0CX35; P0CX37; P0CX39; P0CX47; P0CX51; P15646; P25635; P26783; P32899; P33750; P34247; P35194; P38333; P38882; P39990; P40055; P40079; P40362; P42945; P47083; P48234; P53276; P53914; P53941; Q02354; Q02931; Q04177; Q04305; Q04500; Q05498; Q05946; Q06078; Q06506; Q06512; Q06631; Q06679; Q08096; Q08492; Q08965; Q12035; Q12136; Q12220; Q12460; Q12499; Q3E7X9; Q99207; | 100.0 | 1×ZN; 1×GTP; 1×MG; | |||
| Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state A (Poly-Ala) |
Heteromer O13516; P05756; P06367; P0C0W1; P0CX29; P0CX51; P0CX55; P15646; P25368; P25586; P25635; P26783; P26786; P32899; P33442; P33750; P34247; P35997; P36144; P38333; P38882; P39990; P40055; P40362; P40470; P40546; P42945; P47083; P53254; P53276; P53941; Q02354; Q02931; Q04177; Q04305; Q04500; Q05498; Q05946; Q06078; Q06506; Q06512; Q06679; Q08096; Q08492; Q08965; Q12035; Q12136; Q12220; Q12460; Q12499; Q3E7X9; Q99207; Q99216; | 100.0 | 2×ZN; 2×MG; 1×GTP; | |||
| Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala) |
Heteromer O13516; P05756; P06367; P07280; P0C0W1; P0CX29; P0CX31; P0CX35; P0CX37; P0CX39; P0CX47; P0CX51; P0CX55; P25368; P25635; P26783; P26786; P32899; P33442; P35997; P38333; P41819; P47083; P53254; P53941; Q04217; Q05946; Q06078; Q06512; Q08096; Q08965; Q12136; Q12220; Q3E792; Q3E7X9; Q99207; Q99216; | 100.0 | 1×ZN; | |||
| Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C |
Heteromer O13516; P05756; P06367; P07280; P0C0W1; P0CX29; P0CX31; P0CX35; P0CX37; P0CX39; P0CX47; P0CX51; P0CX55; P26783; P26786; P33442; P35997; P38333; P41819; P47083; P53941; Q04217; Q04500; Q05498; Q08096; Q08965; Q12136; Q3E792; Q3E7X9; Q99207; Q99216; | 100.0 | 1×ZN; 1×GTP; 39×MG; | |||
| Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) |
Heteromer O13516; P05756; P06367; P0C0W1; P0CX29; P0CX31; P0CX33; P0CX35; P0CX39; P0CX47; P0CX51; P15646; P25368; P25586; P25635; P26783; P26786; P32899; P33442; P35997; P36144; P39990; P40362; P42945; P47083; P53254; P53941; Q05498; Q05946; Q06078; Q06506; Q08096; Q08965; Q12220; Q12460; Q12499; Q3E7X9; Q99216; | 100.0 | ||||
| Cryo-EM structure of the 90S pre-ribosome |
Heteromer A0A0E3MJI1; A4VD76; G0S273; G0S3V7; G0S5L1; G0S7X0; G0SDL4; G0SE30; G0SE90; I7MAL3; I7MD19; O13516; P05756; P06367; P0C0W1; P0C233; P0CX51; P26783; P55858; P58032; Q06078; Q06506; Q08096; Q08965; Q22AV0; Q22B78; Q23DE3; Q3E7X9; | 100.0 | ||||
| Architecture of the yeast small subunit processome |
Heteromer O13516; P0C0W1; P0CX29; P0CX31; P0CX35; P0CX37; P0CX39; P0CX47; P0CX51; P26783; P26786; P39990; Q06078; Q06506; Q08096; Q08965; Q3E7X9; | 100.0 | ||||
| Cryo-EM structure of 90S small subunit preribosomes in transition states (State E) |
Heteromer O13516; P05756; P06367; P0CX29; P0CX31; P0CX35; P0CX37; P0CX39; P0CX47; P0CX51; P15646; P25368; P25635; P26783; P26786; P32899; P33442; P33750; P34247; P35194; P35997; P38882; P39990; P40055; P40362; P42945; P47083; P53254; P53941; Q02354; Q02931; Q04177; Q04305; Q04500; Q05022; Q05498; Q05946; Q06078; Q06506; Q06679; Q08096; Q08965; Q12035; Q12136; Q12220; Q12460; Q12499; Q3E7X9; Q3E7Y3; Q99207; | 100.0 | 2×ZN; 1×GTP; 1×MG; | |||
| Crystal structure of Saccharomyces Cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine | homo-2-mer | 100.0 | 2×SAH; 1×GOL; | |||
| Crystal structure of Saccharomyces cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine and 1 molec… | homo-2-mer | 100.0 | 2×GOL; 1×SAH; 1×MG; 1×CL; | |||
| Crystal structure of Saccharomyces Cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine and 2 molec… | homo-2-mer | 100.0 | 2×SAH; 1×MG; | |||
| The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase | monomer | 100.0 | 2×SO4; | |||
| The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase | monomer | 100.0 | 2×SO4; 1×SAM; | |||
1 SWISS-MODEL model
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 5wlc.53.A | monomer | 0.79 | 100.00 | |||