Q12080 | SWISS-MODEL Repository

Q12080 (NOP53_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ribosome biogenesis protein NOP53 UniProtKB InterPro STRING Interactive Modelling

455 aa; Sequence (Fasta) ; 2 identical sequences: Saccharomyces cerevisiae: N1NW14, A0A8H4BTS9

It is possible new templates exist for this target since these models were created.

However, an attempt to improve models for this target was made on 2024-04-02. The outcome - only low quality models could be built.

Available Structures

12 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Cryo-em structure of eukaryotic pre-60S ribosomal subunits	3jct SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12522; Q12690;	167-455	4×ZN; 2×GTP; 2×MG;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	7uqz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12522; Q12690;	191-455	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	7uoo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12522; Q12690;	191-455	81×MG; 3×B3P; 5×ZN; 1×GDP; 1×GTP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppr…	7v08 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12522; Q12690;	191-455	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strai…	7uqb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12522; Q12690;	191-455	3×B3P; 81×MG; 5×ZN; 2×GDP; 1×ALF; 1×K;
Assess
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 A…	7btb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40078; P40693; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12522; Q12690;	192-455	2×GTP; 2×MG; 3×ZN;
Assess
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 2…	6m62 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12522; Q12690;	199-455	4×ZN; 2×GTP; 2×MG;
Assess
State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model	7u0h SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12522; Q12690;	200-452	1×MG; 4×ZN;
Assess
Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	7ohq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12522; Q12690;	203-455	2×MG; 3×ZN;
Assess
pre-60S State NE2 (TAP-Flag-Nop53)	6yly SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12522; Q12690;	205-455	3×ZN;
Assess
pre-60S State NE1 (TAP-Flag-Nop53)	6ylx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12522; Q12690;	221-429
Assess
Structure of the Mtr4 Nop53 Complex	5ooq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P47047;	59-70	3×SO4;
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
3jct.1.g	monomer	0.58	167-455		100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

Q12080 (NOP53_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ribosome biogenesis protein NOP53 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

12 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Ribosome biogenesis protein NOP53 UniProtKB InterPro STRING Interactive Modelling