Q15858 | SWISS-MODEL Repository

Q15858 (SCN9A_HUMAN) Homo sapiens (Human)

Sodium channel protein type 9 subunit alpha UniProtKB InterPro STRING Interactive Modelling

1988 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4)

Available Structures

40 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Cryo-EM structure of human Nav1.7(E406K) in complex with auxiliary beta subunits, ProTx-II and tetr…	7w9m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1891	99.93	2×NAG; 1×9SR; 6×NAG; 1×P5S; 5×Y01; 1×LPE;
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Cryo-EM structure of human Nav1.7(E406K) in complex with auxiliary beta subunits, huwentoxin-IV and…	7w9p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1891	99.93	3×NAG; 1×9SL; 5×NAG; 3×P5S; 6×Y01; 13×LPE; 1×1PW; 5×PCW;
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Cryo-EM structure of human Nav1.7(E406K) in complex with auxiliary beta subunits, huwentoxin-IV and…	7w9t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1891	99.93	3×NAG; 1×9SL; 5×NAG; 2×P5S; 5×Y01; 1×9Z9; 14×LPE; 5×PCW;
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Cryo-EM structure of human Nav1.7-beta1-beta2 complex at 2.2 angstrom resolution	7w9k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1891	100.0	3×NAG; 5×NAG; 3×P5S; 6×Y01; 1×9Z9; 1×NA; 15×LPE; 1×1PW; 5×PCW;
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Cryo-EM structure of human Nav1.7(E406K)-beta1-beta2 complex	7w9l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1891	99.93	3×NAG; 5×NAG; 3×P5S; 6×Y01; 1×9Z9; 14×LPE; 5×PCW;
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Cryo-EM structure of human NaV1.7/beta1/beta2-XEN907	7xm9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	7-1769	100.0	2×NAG; 5×NAG; 1×G2E; 1×6OU;
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Cryo-EM structure of Nav1.7 with CBZ	8s9c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	100.0	3×NAG; 5×NAG; 1×N6W; 3×P5S; 5×Y01; 9×LPE; 4×PCW;
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Voltage-gated sodium channel Nav1.7 variant M4	8xmo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	99.69	2×NAG; 6×NAG; 7×LPE; 5×PCW;
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Cryo-EM structure of Nav1.7 with RLZ	8thg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	100.0	3×NAG; 5×NAG; 1×657; 3×Y01; 6×LPE; 1×PCW; 1×P5S;
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Structure of human Nav1.7 in complex with Vinpocetine	8i5x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	100.0	3×NAG; 5×NAG; 1×P5S; 5×Y01; 1×9Z9; 1×T7F; 11×LPE; 5×PCW;
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Structure of human Nav1.7 in complex with bupivacaine	8i5b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	100.0	2×NAG; 7×NAG; 1×P5S; 6×Y01; 6×LPE; 5×PCW; 1×OJ0;
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Structure of human Nav1.7 in complex with PF-05089771	8i5g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	100.0	3×NAG; 5×NAG; 2×Y01; 1×9Z9; 1×T70; 1×NA; 8×LPE; 5×PCW;
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Human Nav1.7 mutant class-I	7xve PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	99.14	2×NAG; 7×NAG; 1×Y01; 4×CLR; 18×LPE; 1×1PW; 6×PCW; 1×P5S;
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Structure of human Nav1.7 in complex with vixotrigine	8i5y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	100.0	3×NAG; 5×NAG; 1×P5S; 4×Y01; 1×9Z9; 1×TB4; 1×NA; 14×LPE; 1×1PW; 5×PCW;
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Nav1.7 mutant class2	7xvf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	99.13	2×NAG; 7×NAG; 5×Y01; 1×CLR; 17×LPE; 1×1PW; 6×PCW; 1×P5S;
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Voltage-gated sodium channel Nav1.7 variant M2	8xmn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	99.84	2×NAG; 6×NAG; 5×LPE; 3×PCW;
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Cryo-EM structure of Nav1.7 with LCM	8s9b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	100.0	3×NAG; 4×NAG; 2×LQO; 2×P5S; 4×Y01; 8×LPE; 3×PCW;
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Cryo-EM structure of Nav1.7 with LTG	8thh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	8-1768	100.0	3×NAG; 5×NAG; 2×IYJ; 4×Y01; 6×LPE; 3×PCW; 1×P5S;
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Structure of human Nav1.7 in complex with Hardwickii acid	8j4f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q07699;	8-1768	100.0	3×NAG; 5×NAG; 1×UK0; 3×Y01; 1×9Z9; 10×LPE; 4×PCW;
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Cryo-EM structure of Nav1.7 with CBD	8g1a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	11-1766	100.0	2×NAG; 6×NAG; 2×P0T; 2×P5S; 5×Y01; 1×9Z9; 13×LPE; 4×PCW;
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Cryo-EM structure of human NaV1.7/beta1/beta2-TCN-1752	7xmg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	114-1768	100.0	2×NAG; 5×NAG; 1×G4I;
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Cryo-EM structure of human NaV1.7/beta1/beta2-Nav1.7-IN2	7xmf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	114-1768	100.0	2×NAG; 6×NAG; 1×G2W;
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Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, huw…	6j8g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	114-1768	99.91	2×NAG; 7×NAG; 1×9SL;
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Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, huw…	6j8h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	114-1768	99.91	2×NAG; 7×NAG; 1×9SL;
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Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, Pro…	6j8j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	114-1768	99.91	2×NAG; 7×NAG; 1×9SR;
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Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, Pro…	6j8i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60939; Q07699;	114-1768	99.91	2×NAG; 7×NAG; 1×9SR;
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Voltage-gated sodium channel Nav1.7 variant M9	8xmm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q07699;	114-1768	99.21	2×NAG; 6×NAG; 1×CLR; 9×LPE; 1×1PW; 6×PCW; 1×P5S;
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Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296	8f0s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer D0E0C2; P49126;	257-1631	100	1×NAG; 1×NAG; 4×NAG; 1×X80; 1×PEE; 1×Y01;
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Cryo-EM structure of a human-cockroach hybrid Nav channel bound to alpha-scorpion toxin AaH2.	6nt4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer D0E0C2; P01484;	257-1631	100	1×NAG; 5×NAG; 5×76F; 1×AJP; 1×LHG; 1×Y01;
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Structure of NavAb/Nav1.7-VS2A chimera trapped in the resting state by tarantula toxin m3-Huwentoxi…	7k48 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A8EVM5; P83303;	751-841	100
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CryoEM structure of Nav1.7 VSD2 (deactived state) in complex with the gating modifier toxin ProTx2	6n4r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A8EVM5; P83476;	758-843	100
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CryoEM structure of Nav1.7 VSD2 (actived state) in complex with the gating modifier toxin ProTx2	6n4q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A8EVM5; P83476;	758-843	100
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NaChBac-Nav1.7VSDII chimera and HWTX-IV complex	6w6o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P83303; Q9KCR8;	817-835	100	12×POV;
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The co-crystal structure of the Fab fragment of Ab-1080 with NaV1.7 VSDII peptide	8yhz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	765-774	100
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Human Nav1.7-VSD4-NavAb in complex with GX-936.	5ek0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	1529-1624	100	21×PX4; 4×5P2;
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NaChBac-Nav1.7VSDII chimera in nanodisc	6vxo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	817-835	100	12×POV;
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Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305	8f0p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	257-1631	100	1×NAG; 3×NAG; 5×PEE; 1×Y01; 1×X7L;
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Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565	8f0r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	257-1631	100	1×NAG; 5×NAG; 1×X7W; 2×PEE; 1×Y01;
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Cryo-EM structure of a human-cockroach hybrid Nav channel.	6nt3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	257-1631	100	1×NAG; 2×NAG; 4×NAG; 1×Y01; 4×76F; 1×LHG; 1×AJP;
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Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310	8f0q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	257-1631	100	1×NAG; 1×BMA; 2×NAG; 1×X7R; 5×PEE; 1×Y01;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	7w9k.1.A	monomer	0.64	8-1891	2×P5S; 3×Y01; 1×9Z9; 10×LPE; 1×1PW; 4×PCW;	100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

3 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	7w9k.1.A	monomer	0.64	8-1891	2×P5S; 3×Y01; 1×9Z9; 10×LPE; 1×1PW; 4×PCW;	99.90
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Isoform 3	7w9k.1.A	monomer	0.65	8-1880	3×P5S; 4×Y01; 1×9Z9; 11×LPE; 1×1PW; 4×PCW;	99.90
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Isoform 4	7w9k.1.A	monomer	0.65	8-1880	3×P5S; 4×Y01; 1×9Z9; 11×LPE; 1×1PW; 4×PCW;	99.80
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Q15858 (SCN9A_HUMAN) Homo sapiens (Human)

Sodium channel protein type 9 subunit alpha UniProtKBInterProSTRINGInteractive Modelling

Available Structures

40 Experimental Structures

1 SWISS-MODEL model

3 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Sodium channel protein type 9 subunit alpha UniProtKB InterPro STRING Interactive Modelling