Q6NYC1 | SWISS-MODEL Repository

Q6NYC1 (JMJD6_HUMAN) Homo sapiens (Human)

Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 UniProtKB InterPro STRING Interactive Modelling

403 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3); 4 identical sequences: Pongo abelii: Q5R6G2, A0A2J8Y1H3; Pan troglodytes: K7AB48, A0A803KIZ5

Available Structures

6 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Structure of JMJD6 complexd with ALPHA-KETOGLUTARATE and Fab Fragment.	3ldb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1-334	5×GOL; 19×SO4; 1×AKG; 1×FE; 2×HG;
Assess
Structure of JMJD6 and Fab Fragments	3ld8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer	1-334	2×HG; 5×GOL; 19×SO4; 1×FE;
Assess
Solution NMR structures of BRD4 ET domain with JMJD6 peptide	6bnh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O60885;	84-96
Assess
Structure of an oxygenase	3k2o SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	2-335	2×NI; 2×NA; 6×CL; 3×PO4; 2×ACT; 1×GOL;
Assess
Crystal structure of 2OG oxygenase JMJD6 (aa 1-343) in complex with Fe(II) and 2OG	6gdy SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	1-334	2×FE; 2×AKG; 1×NA; 10×PO4; 2×EPE; 3×GOL;
Assess
Structure of JMJD6 bound to Mono-Methyl Arginine.	6mev SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	1-341	1×AKG; 1×FE; 1×NMM;
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
6mev.1.A	monomer	0.92	1-341	1×AKG; 1×FE; 1×NMM;	100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

2 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	6mev.1.A	monomer	0.92	1-341	1×AKG; 1×FE; 1×NMM;	100.00
Assess
Isoform 3	6mev.1.A	monomer	0.92	1-341	1×AKG; 1×FE; 1×NMM;	100.00
Assess

Alignments