Q9RXK1 (RL4_DEIRA) Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Large ribosomal subunit protein uL4 UniProtKBInterProSTRINGInteractive Modelling
205 aa; Sequence (Fasta)
Available Structures
29 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSS8; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 198×MG; | |||
| Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 35×MG; | |||
| Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromy… |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSS8; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 186×MG; 1×HGR; | |||
| Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans |
Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65; | 100 | ||||
| Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacte… |
Heteromer P49228; Q9RXJ7; | 100 | 1×CLY; 2×MG; | |||
| Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 35×MG; 1×1F2; | |||
| Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 35×MG; 1×1F3; | |||
| Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RST0; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | ||||
| 50S Deinococcus radiodurans ribosome bounded with mycinamicin I |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 1×QTZ; 345×MG; | |||
| COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN |
Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65; | 100 | 2×ZIT; | |||
| Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans |
Heteromer P0C8P8; P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 36×MG; | |||
| COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRIS… |
Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65; | 100 | 1×DOL; | |||
| The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA pos… |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 35×MG; 1×ZLD; 2×ZN; | |||
| Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit … |
Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65; | 100 | 1×MUL; | |||
| COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 |
Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65; | 100 | 1×773; | |||
| Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacte… |
Heteromer P49228; Q9RXJ7; | 100 | 1×ERY; 2×MG; | |||
| Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacte… |
Heteromer P49228; Q9RXJ7; | 100 | 3×MG; 1×CLM; | |||
| STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTE… |
Heteromer P49228; Q9RXJ7; | 100 | 1×CTY; 2×MG; | |||
| Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 35×MG; 1×1F4; | |||
| Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans |
Heteromer C6FX52; P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 2×ZN; 1×NO1; 35×MG; | |||
| Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacte… |
Heteromer P49228; Q9RXJ7; | 100 | 1×ROX; 2×MG; | |||
| 50S Deinococcus radiodurans ribosome bounded with mycinamicin I |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 1×QU2; 367×MG; 8×SPD; 4×MPD; 1×NA; 1×EOH; 5×CA; 1×K; | |||
| 50S Deinococcus radiodurans ribosome bounded with mycinamicin IV |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 1×MIV; 277×MG; 7×SPD; | |||
| The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 1×6NO; 446×MG; 5×MPD; 3×SPD; | |||
| Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the … |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 1×LMA; 154×MG; 42×NA; 15×K; | |||
| Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the … |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 1×LC2; 1×LMA; 73×MG; 4×K; 5×NA; | |||
| Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a thre… |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 70×MG; 1×ERY; | |||
| The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with ever… |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 1×6O1; 123×MG; | |||
| Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a thre… |
Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65; | 100 | 51×MG; | |||
1 SWISS-MODEL model
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 4wfn.1.C | monomer | 0.75 | 100.00 | |||