Q9Y2X0 | SWISS-MODEL Repository

Q9Y2X0 (MED16_HUMAN) Homo sapiens (Human)

Mediator of RNA polymerase II transcription subunit 16 UniProtKB InterPro STRING Interactive Modelling

877 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5)

It is possible new templates exist for this target since these models were created.

Available Structures

6 Experimental Structures

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	CryoEM structure of TR-TRAP	8t9d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43513; O60244; O75448; O75586; Q13503; Q15528; Q15648; Q6P2C8; Q71SY5; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9UHV7; Q9ULK4; Q9Y3C7;	15-838	100.0
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	Human Mediator (deletion of MED1-IDR) in a Tail-extended conformation	7emf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O43513; O60244; O75448; O75586; O95402; Q13503; Q15528; Q15648; Q6P2C8; Q71SY5; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y3C7;	12-828	100.0	2×ZN;
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	Structure of human transcriptional Mediator complex	8tqw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O43513; O60244; O75448; O75586; P24863; P49336; Q13503; Q15528; Q15648; Q6P2C8; Q93074; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9UHV7; Q9ULK4; Q9Y3C7;	12-828	100.0	4×ZN;
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	The IDRc bound human core Mediator complex	8trh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O43513; O60244; O75448; O75586; Q13503; Q15528; Q15648; Q6P2C8; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9UHV7; Q9ULK4; Q9Y3C7;	12-828	100.0	2×ZN;
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	Structure of the human Mediator-bound transcription pre-initiation complex	7lbm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O15514; O43513; O60244; O75448; O75586; P13984; P18074; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q71SY5; Q92759; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y3C7;	13-828	100.0	2×MG; 16×ZN; 1×SF4;
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	Human Mediator (deletion of MED1-IDR) in a Tail-bent conformation (MED-B)	7enj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O43513; O60244; O75448; O75586; O95402; Q13503; Q15528; Q15648; Q6P2C8; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y3C7;	13-472	100.0	1×ZN;
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2 SWISS-MODEL models

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	7emf.1.L	monomer	0.69	12-834		99.28
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	6w1s.1.K	monomer	0.54	15-834		92.20
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

6 SWISS-MODEL models built on isoform sequence

	Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	Isoform 2	7emf.1.L	monomer	0.70	12-841	1×ZN;	100.00
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	Isoform 2	6w1s.1.K	monomer	0.54	15-838		92.86
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	Isoform 3	7emf.1.L	monomer	0.68	12-860	1×ZN;	99.64
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	Isoform 3	6w1s.1.K	monomer	0.53	15-857		92.49
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	Isoform 4	7emf.1.L	monomer	0.69	12-634		99.53
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	Isoform 5	7emf.1.L	monomer	0.69	12-649		97.84
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Alignments