SMTL ID : 8tqw.1

Structure of human transcriptional Mediator complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.281, C.284, Q.289, H.306, C.309 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.281, A:C.284, A:H.306, A:C.309 ZN.2: 5 residues within 4Å: Chain Q: C.798, R.800, C.801, C.803, C.827 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:C.798, Q:C.801, Q:C.803, Q:C.827 ZN.3: 4 residues within 4Å: Chain 1: H.1727, H.1729 Chain 2: C.1896, C.1899 4 PLIP interactions: 2 interactions with chain 2, 2 interactions with chain 1 Metal complexes: 2:C.1896, 2:C.1899, 1:H.1727, 1:H.1729 ZN.4: 4 residues within 4Å: Chain 2: C.1096, C.1098, C.1122, C.1124 4 PLIP interactions: 4 interactions with chain 2 Metal complexes: 2:C.1096, 2:C.1098, 2:C.1122, 2:C.1124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chao, T.C. et al., Structural basis of the human transcriptional Mediator regulated by its dissociable kinase module. Mol.Cell (2024)

Release Date

2024-10-09

Peptides

Mediator of RNA polymerase II transcription subunit 27: A
Mediator of RNA polymerase II transcription subunit 28: B
Mediator of RNA polymerase II transcription subunit 29: C
Mediator of RNA polymerase II transcription subunit 30: D
Mediator of RNA polymerase II transcription subunit 31: E
Mediator of RNA polymerase II transcription subunit 1: F
Unknown Chain: G
Mediator of RNA polymerase II transcription subunit 4: H
Mediator of RNA polymerase II transcription subunit 6: I
Mediator of RNA polymerase II transcription subunit 7: J
Mediator of RNA polymerase II transcription subunit 8: K
Mediator of RNA polymerase II transcription subunit 9: L
Mediator of RNA polymerase II transcription subunit 10: M
Mediator of RNA polymerase II transcription subunit 11: N
Mediator of RNA polymerase II transcription subunit 14: O
Mediator of RNA polymerase II transcription subunit 15: P
Mediator of RNA polymerase II transcription subunit 16: Q
Mediator of RNA polymerase II transcription subunit 17: R
Mediator of RNA polymerase II transcription subunit 18: S
Mediator of RNA polymerase II transcription subunit 19: T
Mediator of RNA polymerase II transcription subunit 20: U
Mediator of RNA polymerase II transcription subunit 21: V
Mediator of RNA polymerase II transcription subunit 22: W
Mediator of RNA polymerase II transcription subunit 23: X
Mediator of RNA polymerase II transcription subunit 24: Y
Cyclin-dependent kinase 8: Z
Cyclin-C: 0
Mediator of RNA polymerase II transcription subunit 12: 1
Mediator of RNA polymerase II transcription subunit 13: 2

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

E
4

F
A

G
B

H
D

I
F

J
G

K
H

L
I

M
J

N
K

O
N

P
O

Q
P

R
Q

S
R

T
S

U
T

V
U

W
V

X
W

Y
X

Z
a

0
b

1
c

2
d

Mediator of RNA polymerase II transcription subunit 27

Mediator of RNA polymerase II transcription subunit 28

Mediator of RNA polymerase II transcription subunit 29

Mediator of RNA polymerase II transcription subunit 30

Mediator of RNA polymerase II transcription subunit 31

Mediator of RNA polymerase II transcription subunit 1

Unknown Chain

Mediator of RNA polymerase II transcription subunit 4

Mediator of RNA polymerase II transcription subunit 6

Mediator of RNA polymerase II transcription subunit 7

Mediator of RNA polymerase II transcription subunit 8

Mediator of RNA polymerase II transcription subunit 9

Mediator of RNA polymerase II transcription subunit 10

Mediator of RNA polymerase II transcription subunit 11

Mediator of RNA polymerase II transcription subunit 14

Mediator of RNA polymerase II transcription subunit 15

Mediator of RNA polymerase II transcription subunit 16

Mediator of RNA polymerase II transcription subunit 17

Mediator of RNA polymerase II transcription subunit 18

Mediator of RNA polymerase II transcription subunit 19

Mediator of RNA polymerase II transcription subunit 20

Mediator of RNA polymerase II transcription subunit 21

Mediator of RNA polymerase II transcription subunit 22

Mediator of RNA polymerase II transcription subunit 23

Mediator of RNA polymerase II transcription subunit 24

Cyclin-dependent kinase 8

Cyclin-C

Mediator of RNA polymerase II transcription subunit 12

Mediator of RNA polymerase II transcription subunit 13

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