Q9YN02 (RPOA_PRRS1) Porcine reproductive and respiratory syndrome virus (strain 16244B)(PRRSV)

Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling

3961 aa; Sequence (Fasta) ; (Isoform 2)

Available Structures

Serine protease nsp4 1810-2013; PRO_0000036663

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
5y4l.1.Ahomo-2-mer0.741810-2011
95.10
Assess

RNA-directed RNA polymerase 2459-3144; PRO_0000036665

DescriptionPDB IDOligo-stateRangeLigands
Integrated illustration of a valid epitope based on the SLA class I structure and tetramer techniqu…
5ylx
 Heteromer
H6TIB1; Q07717; 		2703-2711
Assess

Helicase nsp10 3145-3585; PRO_0000036667

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6lkx.1.Ahomo-2-mer0.743147-3585
6×ZN;96.37
Assess
6jdr.1.Amonomer0.713148-3577
3×ZN;96.58
Assess
4n0o.1.Amonomer0.613148-3527
1×ZN;37.57
Assess

Uridylate-specific endoribonuclease nsp11 3586-3808; PRO_0000036668

DescriptionPDB IDOligo-stateRangeLigands
Structure of PRRSV apo-NSP11 at 2.16A
5eyi
homo-2-mer3586-3807
1×SO4; 1×CL; 1×PG0;
Assess
TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
5da1.1.Ahomo-2-mer0.713586-3808
94.62
Assess

4 SWISS-MODEL models built on isoform sequence

TemplateIsoformOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
Isoform 25y4l.1.Ahomo-2-mer0.851810-2011
95.10
Assess
Isoform 23mtv.1.Bhomo-2-mer0.76181-382
83.25
Assess
Isoform 23ifu.1.Bhomo-2-mer0.716-180
4×ZN;97.22
Assess
Isoform 25i65.1.Amonomer0.682200-2348
97.32
Assess