SMTL ID : 5ylx.1

Integrated illustration of a valid epitope based on the SLA class I structure and tetramer technique could carry forward the development of molecular vaccine in swine species

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x THR- MET- PRO- PRO- GLY- PHE- GLU- LEU- TYR: PRRSV-NSP9-TMP9 peptide(Non-covalent)

THR-MET-PRO-PRO-GLY-PHE-GLU-LEU-TYR.1: 22 residues within 4Å: Chain A: Y.7, M.45, E.63, K.66, V.67, N.70, T.73, N.77, L.81, Y.84, L.95, F.99, D.116, Y.123, T.143, K.146, W.147, A.152, Y.159, L.163, S.167, Y.171 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:N.70, A:T.73, A:N.77, A:L.81, A:L.95, A:F.99, A:Y.123, A:T.143, A:W.147, A:A.152, A:Y.159, A:L.163 Hydrogen bonds: A:Y.7, A:E.63, A:T.73, A:N.77, A:N.77, A:D.116, A:Y.159, A:S.167, A:Y.171, A:Y.171 Water bridges: A:E.63, A:R.65, A:R.65, A:D.69, A:D.69, A:Y.74 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, X. et al., Illumination of PRRSV Cytotoxic T Lymphocyte Epitopes by the Three-Dimensional Structure and Peptidome of Swine Lymphocyte Antigen Class I (SLA-I). Front Immunol (2019)

Release Date

2018-10-24

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

Related Entries With Identical Sequence