SMTL ID : 1a0h.1

THE X-RAY CRYSTAL STRUCTURE OF PPACK-MEIZOTHROMBIN DESF1: KRINGLE/THROMBIN AND CARBOHYDRATE/KRINGLE/THROMBIN INTERACTIONS AND LOCATION OF THE LINKER CHAIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: D.72, Q.73 Chain B: L.46, N.53, T.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.72, A:Q.73 NAG-NAG.2: 5 residues within 4Å: Chain C: D.72, Q.73 Chain D: L.46, P.48, N.53 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.72

2 x 0G6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide(Covalent)

0G6.3: 16 residues within 4Å: Chain B: H.43, Y.47, E.94, L.96, I.179, D.199, A.200, C.201, E.202, G.203, D.204, S.205, S.226, W.227, G.228, G.230 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.96, B:L.96, B:I.179, B:W.227 Hydrogen bonds: B:G.203, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230 Salt bridges: B:D.199 0G6.4: 15 residues within 4Å: Chain D: H.43, Y.47, W.50, E.94, L.96, D.199, A.200, G.203, D.204, S.205, S.226, W.227, G.228, G.230, G.238 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:Y.47, D:L.96, D:L.96, D:W.227 Hydrogen bonds: D:H.43, D:G.203, D:D.204, D:S.205, D:G.228, D:G.228, D:G.230 Salt bridges: D:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin, P.D. et al., New insights into the regulation of the blood clotting cascade derived from the X-ray crystal structure of bovine meizothrombin des F1 in complex with PPACK. Structure (1997)

Release Date

1998-06-17

Peptides

MEIZOTHROMBIN: AC
MEIZOTHROMBIN: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
B

D
E

MEIZOTHROMBIN

MEIZOTHROMBIN

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