SMTL ID : 2a1d.2 (1 other biounit)

Staphylocoagulase bound to bovine thrombin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 0G6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide(Covalent)

0G6.1: 17 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, L.96, D.199, A.200, C.201, E.202, G.203, D.204, S.205, S.226, W.227, G.228, G.230, C.231 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:W.227 Hydrogen bonds: B:A.200, B:G.203, B:D.204, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230 Salt bridges: B:D.199, B:E.202

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain B: Y.190, G.198, D.232 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.190, B:Y.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Friedrich, R. et al., Structural Basis for Reduced Staphylocoagulase-mediated Bovine Prothrombin Activation. J.Biol.Chem. (2006)

Release Date

2005-09-27

Peptides

thrombin: A
thrombin: B
Staphylocoagulase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
H

thrombin

thrombin

Staphylocoagulase

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