- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.2: 13 residues within 4Å:- Chain A: S.72, K.75, R.180, W.235, G.283, C.284, C.287, M.289, P.290, C.291, C.491, L.493
- Ligands: PTE.4
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.284, A:C.287, A:C.291, A:C.491
SF4.6: 12 residues within 4Å:- Chain B: S.72, K.75, R.180, G.283, C.284, C.287, M.289, P.290, C.291, C.491, L.493
- Ligands: PTE.8
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.284, B:C.287, B:C.291, B:C.491
SF4.10: 12 residues within 4Å:- Chain C: S.72, K.75, R.180, W.235, G.283, C.284, C.287, M.289, P.290, C.291, C.491
- Ligands: PTE.12
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.284, C:C.287, C:C.291, C:C.491
SF4.14: 11 residues within 4Å:- Chain D: S.72, K.75, R.180, G.283, C.284, C.287, M.289, P.290, C.291, C.491
- Ligands: PTE.16
4 PLIP interactions:4 interactions with chain D,- Metal complexes: D:C.284, D:C.287, D:C.291, D:C.491
- 4 x GUA: GLUTARIC ACID(Non-covalent)
GUA.3: 11 residues within 4Å:- Chain A: Y.307, E.308, Y.416, H.437, W.441, R.481, R.492, L.493, V.496, E.497
- Ligands: PTE.4
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.441
- Hydrogen bonds: A:E.308
- Salt bridges: A:H.437, A:R.481, A:R.492
GUA.7: 11 residues within 4Å:- Chain B: Y.307, E.308, Y.416, H.437, W.441, R.481, R.492, L.493, V.496, E.497
- Ligands: PTE.8
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.441
- Hydrogen bonds: B:Y.416
- Salt bridges: B:H.437, B:R.481, B:R.492
GUA.11: 11 residues within 4Å:- Chain C: Y.307, E.308, Y.416, H.437, W.441, R.481, R.492, L.493, V.496, E.497
- Ligands: PTE.12
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:W.441, C:L.493, C:V.496
- Hydrogen bonds: C:Y.416
- Salt bridges: C:H.437, C:R.481, C:R.492
GUA.15: 11 residues within 4Å:- Chain D: Y.307, E.308, Y.416, H.437, W.441, R.481, R.492, L.493, V.496, E.497
- Ligands: PTE.16
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:W.441, D:V.496
- Salt bridges: D:H.437, D:R.481, D:R.492
- 4 x PTE: TUNGSTOPTERIN COFACTOR(Non-covalent)
PTE.4: 35 residues within 4Å:- Chain A: K.75, G.91, N.92, L.93, G.94, G.179, R.180, A.181, A.182, G.183, R.184, T.240, C.284, D.306, E.308, N.309, A.332, D.333, M.337, D.338, T.339, I.340, H.436, H.437, K.438, F.485, E.486, T.489, A.490, C.491, R.492, L.493
- Ligands: CA.1, SF4.2, GUA.3
26 PLIP interactions:24 interactions with chain A, 2 Ligand-Water interactions,- Hydrogen bonds: A:K.75, A:N.92, A:G.94, A:G.94, A:G.179, A:A.181, A:G.183, A:R.184, A:N.309, A:M.337, A:T.339, A:A.490, A:R.492, A:R.492
- Water bridges: A:E.304, A:R.492, A:R.492
- Salt bridges: A:K.75, A:R.180, A:D.333, A:H.436, A:K.438, A:E.486
- Metal complexes: A:N.92, H2O.2, H2O.2
PTE.8: 34 residues within 4Å:- Chain B: K.75, G.91, N.92, L.93, G.94, G.179, R.180, A.181, A.182, G.183, R.184, C.284, D.306, E.308, N.309, A.332, D.333, M.337, D.338, T.339, I.340, H.436, H.437, K.438, F.485, E.486, T.489, A.490, C.491, R.492, L.493
- Ligands: CA.5, SF4.6, GUA.7
28 PLIP interactions:27 interactions with chain B, 1 Ligand-Water interactions,- Hydrogen bonds: B:K.75, B:N.92, B:G.94, B:G.94, B:G.179, B:A.181, B:G.183, B:R.184, B:N.309, B:M.337, B:D.338, B:T.339, B:K.438, B:A.490, B:R.492, B:R.492
- Water bridges: B:E.304, B:R.492, B:R.492
- Salt bridges: B:K.75, B:R.180, B:D.333, B:H.436, B:K.438, B:E.486
- Metal complexes: B:N.92, B:A.181, H2O.4
PTE.12: 34 residues within 4Å:- Chain C: K.75, G.91, N.92, L.93, G.94, G.179, R.180, A.181, A.182, G.183, R.184, C.284, D.306, E.308, N.309, A.332, D.333, M.337, D.338, T.339, I.340, H.436, H.437, K.438, F.485, E.486, T.489, A.490, C.491, R.492, L.493
- Ligands: CA.9, SF4.10, GUA.11
29 PLIP interactions:27 interactions with chain C, 2 Ligand-Water interactions,- Hydrogen bonds: C:K.75, C:N.92, C:G.94, C:G.94, C:G.179, C:A.181, C:G.183, C:R.184, C:D.306, C:N.309, C:M.337, C:D.338, C:T.339, C:K.438, C:T.489, C:A.490, C:R.492, C:R.492
- Water bridges: C:R.180, C:R.492
- Salt bridges: C:K.75, C:R.180, C:D.333, C:H.436, C:K.438, C:E.486
- Metal complexes: C:N.92, H2O.5, H2O.6
PTE.16: 34 residues within 4Å:- Chain D: K.75, G.91, N.92, L.93, G.94, G.179, R.180, A.181, A.182, G.183, R.184, C.284, D.306, E.308, N.309, A.332, D.333, M.337, D.338, T.339, I.340, H.436, H.437, K.438, F.485, E.486, T.489, A.490, C.491, R.492, L.493
- Ligands: CA.13, SF4.14, GUA.15
27 PLIP interactions:26 interactions with chain D, 1 Ligand-Water interactions,- Hydrogen bonds: D:K.75, D:N.92, D:G.94, D:G.94, D:G.179, D:A.181, D:G.183, D:R.184, D:D.306, D:N.309, D:M.337, D:D.338, D:T.339, D:K.438, D:T.489, D:A.490, D:R.492, D:R.492
- Salt bridges: D:K.75, D:R.180, D:D.333, D:H.436, D:K.438, D:E.486
- Metal complexes: D:N.92, D:A.181, H2O.7
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hu, Y. et al., Formaldehyde ferredoxin oxidoreductase from Pyrococcus furiosus: the 1.85 A resolution crystal structure and its mechanistic implications. J.Mol.Biol. (1999)
- Release Date
- 1999-05-18
- Peptides
- FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 4 x GUA: GLUTARIC ACID(Non-covalent)
- 4 x PTE: TUNGSTOPTERIN COFACTOR(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hu, Y. et al., Formaldehyde ferredoxin oxidoreductase from Pyrococcus furiosus: the 1.85 A resolution crystal structure and its mechanistic implications. J.Mol.Biol. (1999)
- Release Date
- 1999-05-18
- Peptides
- FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D