- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 7 residues within 4Å:- Chain A: N.117, L.118, R.120
- Chain B: N.117, L.118, R.120
- Ligands: MG.6
5 PLIP interactions:2 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: B:L.118, B:R.120, A:L.118, A:R.120, H2O.270
MG.6: 7 residues within 4Å:- Chain A: N.117, L.118, R.120
- Chain B: N.117, L.118, R.120
- Ligands: MG.2
5 PLIP interactions:2 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: B:L.118, B:R.120, A:L.118, A:R.120, H2O.270
MG.10: 7 residues within 4Å:- Chain C: N.117, L.118, R.120
- Chain D: N.117, L.118, R.120
- Ligands: MG.14
5 PLIP interactions:2 interactions with chain D, 2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: D:L.118, D:R.120, C:L.118, C:R.120, H2O.962
MG.14: 7 residues within 4Å:- Chain C: N.117, L.118, R.120
- Chain D: N.117, L.118, R.120
- Ligands: MG.10
5 PLIP interactions:2 interactions with chain D, 2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: D:L.118, D:R.120, C:L.118, C:R.120, H2O.962
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.4: 25 residues within 4Å:- Chain A: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Chain B: N.23, P.24, G.25, E.47, H.70, N.77
- Ligands: CA.1
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:Y.433, A:Y.458, A:Y.458, A:L.461
- Hydrogen bonds: A:S.376, A:T.377, A:S.378, A:G.401, A:L.403, A:G.427, A:G.429, A:S.430, A:Y.433, A:N.455, A:G.459, A:A.460
- Water bridges: A:D.428, A:D.428
TPP.8: 25 residues within 4Å:- Chain A: N.23, P.24, G.25, E.47, H.70, N.77
- Chain B: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Ligands: CA.5
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:Y.433, B:Y.458, B:Y.458, B:L.461
- Hydrogen bonds: B:S.376, B:T.377, B:S.378, B:G.401, B:L.403, B:G.427, B:G.429, B:S.430, B:Y.433, B:N.455, B:G.459, B:A.460
- Water bridges: B:D.428, B:D.428
TPP.12: 25 residues within 4Å:- Chain C: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Chain D: N.23, P.24, G.25, E.47, H.70, N.77
- Ligands: CA.9
19 PLIP interactions:18 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:Y.433, C:Y.458, C:Y.458, C:L.461
- Hydrogen bonds: C:S.376, C:T.377, C:T.377, C:S.378, C:G.401, C:L.403, C:G.427, C:G.429, C:S.430, C:N.455, C:G.459, C:A.460
- Water bridges: C:D.428, C:D.428, D:E.47
TPP.16: 25 residues within 4Å:- Chain C: N.23, P.24, G.25, E.47, H.70, N.77
- Chain D: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Ligands: CA.13
19 PLIP interactions:18 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:Y.433, D:Y.458, D:Y.458, D:L.461
- Hydrogen bonds: D:S.376, D:T.377, D:T.377, D:S.378, D:G.401, D:L.403, D:G.427, D:G.429, D:S.430, D:N.455, D:G.459, D:A.460
- Water bridges: D:D.428, D:D.428, C:E.47
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hasson, M.S. et al., The crystal structure of benzoylformate decarboxylase at 1.6 A resolution: diversity of catalytic residues in thiamin diphosphate-dependent enzymes. Biochemistry (1998)
- Release Date
- 1998-06-24
- Peptides
- BENZOYLFORMATE DECARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hasson, M.S. et al., The crystal structure of benzoylformate decarboxylase at 1.6 A resolution: diversity of catalytic residues in thiamin diphosphate-dependent enzymes. Biochemistry (1998)
- Release Date
- 1998-06-24
- Peptides
- BENZOYLFORMATE DECARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A