SMTL ID : 1c8h.4 (4 other biounits)

CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-hexamer

Ligands

12 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 2 residues within 4Å: Chain D: D.237, D.239 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.237, D:D.237, D:D.239 CA.2: 4 residues within 4Å: Chain A: H.403, D.405 Chain D: D.237, D.240 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain D Metal complexes: A:D.405, D:D.237, D:D.240 CA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.4: 2 residues within 4Å: Chain B: H.403, D.405 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.405 CA.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain C: H.403, D.405 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.405 CA.7: 2 residues within 4Å: Chain E: D.237, D.239 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:D.237, E:D.237, E:D.239 CA.8: 4 residues within 4Å: Chain D: H.403, D.405 Chain E: D.237, D.240 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain D Metal complexes: E:D.237, E:D.240, D:D.405 CA.9: 2 residues within 4Å: Chain A: D.237, D.239 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.237, A:D.237, A:D.239 CA.10: 4 residues within 4Å: Chain A: D.237, D.240 Chain E: H.403, D.405 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain E Metal complexes: A:D.237, A:D.240, E:D.405 CA.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.12: 2 residues within 4Å: Chain F: H.403, D.405 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:D.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simpson, A.A. et al., Host range and variability of calcium binding by surface loops in the capsids of canine and feline parvoviruses. J.Mol.Biol. (2000)

Release Date

2000-08-09

Peptides

CANINE PARVOVIRUS CAPSID: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

CANINE PARVOVIRUS CAPSID

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