SMTL ID : 4dpv.2 (3 other biounits)

PARVOVIRUS/DNA COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-pentamer

Ligands

20 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain A: C.4, T.6, C.7, T.9 Chain B: N.180 No protein-ligand interaction detected (PLIP) MG.2: 3 residues within 4Å: Chain A: A.3, C.7, T.9 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: D.237, D.240 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.237, B:D.240 MG.4: 2 residues within 4Å: Chain B: D.237, D.239 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.237, B:D.239 MG.5: 5 residues within 4Å: Chain C: C.4, T.6, C.7, T.9 Chain D: N.180 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain C: A.3, C.7, T.9 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain D: D.237, D.240 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.237, D:D.240 MG.8: 2 residues within 4Å: Chain D: D.237, D.239 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.237, D:D.239 MG.9: 5 residues within 4Å: Chain E: C.4, T.6, C.7, T.9 Chain F: N.180 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain E: A.3, C.7, T.9 No protein-ligand interaction detected (PLIP) MG.11: 2 residues within 4Å: Chain F: D.237, D.240 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.237, F:D.240 MG.12: 2 residues within 4Å: Chain F: D.237, D.239 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.237, F:D.239 MG.13: 5 residues within 4Å: Chain G: C.4, T.6, C.7, T.9 Chain H: N.180 No protein-ligand interaction detected (PLIP) MG.14: 3 residues within 4Å: Chain G: A.3, C.7, T.9 No protein-ligand interaction detected (PLIP) MG.15: 2 residues within 4Å: Chain H: D.237, D.240 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.237, H:D.240 MG.16: 2 residues within 4Å: Chain H: D.237, D.239 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.237, H:D.239 MG.17: 5 residues within 4Å: Chain I: C.4, T.6, C.7, T.9 Chain J: N.180 No protein-ligand interaction detected (PLIP) MG.18: 3 residues within 4Å: Chain I: A.3, C.7, T.9 No protein-ligand interaction detected (PLIP) MG.19: 2 residues within 4Å: Chain J: D.237, D.240 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:D.237, J:D.240 MG.20: 2 residues within 4Å: Chain J: D.237, D.239 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:D.237, J:D.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, Q. et al., Canine parvovirus capsid structure, analyzed at 2.9 A resolution. J.Mol.Biol. (1996)

Release Date

1997-04-01

Peptides

PROTEIN (PARVOVIRUS COAT PROTEIN): BDFHJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
Z

D
Z

F
Z

H
Z

J
Z

PROTEIN (PARVOVIRUS COAT PROTEIN)

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