- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x CA: CALCIUM ION(Non-covalent)
- 2 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)
PQQ.4: 18 residues within 4Å:- Chain A: Q.76, H.144, R.228, N.229, Q.231, Q.246, G.247, P.248, Y.343, W.346, T.348, A.350, L.376, K.377, R.406, R.408
- Ligands: CA.3, GOL.5
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:Y.343, A:A.350, A:K.377
- Hydrogen bonds: A:R.228, A:R.228, A:N.229, A:Q.231, A:Q.246, A:T.348, A:R.406
- Water bridges: A:G.247, A:A.350, A:R.408, A:R.408, A:R.408
- Salt bridges: A:K.377, A:R.406, A:R.406, A:R.408
PQQ.11: 18 residues within 4Å:- Chain B: Q.76, H.144, R.228, N.229, Q.231, Q.246, G.247, P.248, Y.343, W.346, T.348, A.350, L.376, K.377, R.406, R.408
- Ligands: CA.10, GOL.12
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:Y.343, B:A.350
- Hydrogen bonds: B:R.228, B:R.228, B:N.229, B:Q.231, B:Q.246, B:T.348, B:R.406
- Water bridges: B:R.408, B:R.408, B:R.408
- Salt bridges: B:K.377, B:R.406, B:R.408
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 4 residues within 4Å:- Chain A: L.169, Y.343, W.346
- Ligands: PQQ.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.343
- Water bridges: A:Q.168
GOL.6: 1 residues within 4Å:- Chain A: K.299
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.299
GOL.7: 8 residues within 4Å:- Chain A: P.3, L.4, D.335, C.345, W.346, P.347, R.378, Q.430
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.335, A:D.335, A:R.378, A:R.378, A:Q.430, A:Q.430
GOL.12: 2 residues within 4Å:- Chain B: Y.343
- Ligands: PQQ.11
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oubrie, A. et al., Structure and mechanism of soluble quinoprotein glucose dehydrogenase. EMBO J. (1999)
- Release Date
- 2000-02-04
- Peptides
- SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x CA: CALCIUM ION(Non-covalent)
- 2 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Oubrie, A. et al., Structure and mechanism of soluble quinoprotein glucose dehydrogenase. EMBO J. (1999)
- Release Date
- 2000-02-04
- Peptides
- SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B