SMTL ID : 1cf3.1

GLUCOSE OXIDASE FROM APERGILLUS NIGER

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 3 residues within 4Å: Chain A: T.87, N.89, Y.509 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: Y.159, N.161, S.163, C.164 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.159, A:Y.159 NAG.3: 4 residues within 4Å: Chain A: N.355, E.363, H.366, N.407 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.363 Water bridges: A:N.355, A:N.407, A:N.407 NAG.4: 6 residues within 4Å: Chain A: N.388, T.390, A.391, I.394, E.527, M.528 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.388, A:A.391

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.5: 37 residues within 4Å: Chain A: G.26, G.27, G.28, L.29, T.30, I.49, E.50, S.51, Y.68, F.72, H.78, Y.80, R.95, G.97, N.98, G.99, G.102, S.103, T.104, N.107, G.108, G.109, T.110, Y.249, V.250, A.288, A.289, G.290, V.293, Y.515, H.516, D.548, G.549, H.559, V.560, M.561, F.564 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.72, A:N.107, A:Y.515, A:Y.515 Hydrogen bonds: A:L.29, A:T.30, A:S.51, A:G.97, A:G.99, A:G.102, A:S.103, A:N.107, A:G.108, A:T.110, A:T.110, A:V.250, A:V.250, A:G.549, A:H.559, A:M.561 Water bridges: A:G.28, A:G.31, A:S.103, A:T.110, A:T.562

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wohlfahrt, G. et al., 1.8 and 1.9 A resolution structures of the Penicillium amagasakiense and Aspergillus niger glucose oxidases as a basis for modelling substrate complexes. Acta Crystallogr.,Sect.D (1999)

Release Date

1999-03-26

Peptides

PROTEIN (GLUCOSE OXIDASE): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (GLUCOSE OXIDASE)

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