SMTL ID : 3qvr.1

Crystal structure of glucose oxidase for space group P3121 at 1.3 A resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 4 residues within 4Å: Chain A: A.86, T.87, N.89, Y.509 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: Y.159, N.161, S.163, C.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.161 Water bridges: A:K.116, A:K.116, A:K.116, A:N.161 NAG.3: 4 residues within 4Å: Chain A: N.355, E.363, H.366, N.407 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.355 Water bridges: A:N.355, A:E.363, A:E.363, A:N.407 NAG.4: 6 residues within 4Å: Chain A: N.388, T.390, A.391, I.394, E.527, M.528 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.391 Water bridges: A:N.388

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.5: 37 residues within 4Å: Chain A: G.26, G.28, L.29, T.30, I.49, E.50, S.51, Y.68, F.72, H.78, Y.80, R.95, G.97, N.98, G.99, G.101, G.102, S.103, T.104, N.107, G.108, G.109, T.110, Q.248, Y.249, V.250, A.288, A.289, G.290, V.293, Y.515, D.548, G.549, H.559, V.560, M.561, F.564 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:F.72, A:Y.515, A:Y.515 Hydrogen bonds: A:G.27, A:L.29, A:T.30, A:S.51, A:G.97, A:G.99, A:G.101, A:S.103, A:T.104, A:N.107, A:G.108, A:T.110, A:T.110, A:T.110, A:V.250, A:V.250, A:G.549, A:V.560, A:M.561 Water bridges: A:G.28, A:G.31, A:Y.80, A:S.103, A:S.291, A:T.562 pi-Cation interactions: A:H.516

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: R.147, H.172, H.220, E.221 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kommoju, P.R. et al., Probing oxygen activation sites in two flavoprotein oxidases using chloride as an oxygen surrogate. Biochemistry (2011)

Release Date

2011-06-01

Peptides

Glucose oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose oxidase

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