SMTL ID : 1cpo.1

CHLOROPEROXIDASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- XYS- MAN- XYS: alpha-D-mannopyranose-(1-3)-alpha-D-xylopyranose-(1-6)-[alpha-D-xylopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-XYS-MAN-XYS.1: 8 residues within 4Å: Chain A: S.26, R.47, V.83, N.94, T.96, F.280, L.281, L.282 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.83, A:L.282 Hydrogen bonds: A:L.282

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 9 residues within 4Å: Chain A: K.212, Y.213, T.216, N.217, H.223, L.224, P.293, L.295, D.299 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.293

1 x MAN- ARB: beta-L-arabinopyranose-(1-2)-alpha-D-mannopyranose(Post Translational Modification)

MAN-ARB.3: 3 residues within 4Å: Chain A: A.274, T.276, M.277 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain A: Y.9, P.10, Y.11, N.13 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.9, A:P.10, A:N.13 Water bridges: A:N.13

9 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.5: 5 residues within 4Å: Chain A: E.236, T.239, S.240, E.267 Ligands: MAN.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.267, A:E.267 MAN.6: 7 residues within 4Å: Chain A: Y.151, D.201, E.202, P.204, F.237, S.240 Ligands: MAN.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.151, A:E.202 MAN.7: 11 residues within 4Å: Chain A: P.179, N.182, V.183, T.239, S.242, S.243, L.246, G.265, A.266, A.268 Ligands: MAN.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.179, A:G.265, A:G.265, A:A.268 MAN.8: 5 residues within 4Å: Chain A: S.240, S.243, A.244, A.247 Ligands: MAN.6 No protein-ligand interaction detected (PLIP) MAN.10: 4 residues within 4Å: Chain A: A.152, D.153, E.156, T.251 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.150 MAN.11: 5 residues within 4Å: Chain A: V.142, E.156, Q.160, S.252, P.254 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.141, A:Q.160, A:S.252, A:T.253 MAN.12: 3 residues within 4Å: Chain A: V.250, T.253, I.262 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.250 Water bridges: A:V.250 MAN.13: 1 residues within 4Å: Chain A: T.284 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.284, A:A.286 MAN.14: 2 residues within 4Å: Chain A: T.294, L.295 No protein-ligand interaction detected (PLIP)

1 x XYS: alpha-D-xylopyranose(Post Translational Modification)

XYS.9: 3 residues within 4Å: Chain A: S.249, V.250, T.251 No protein-ligand interaction detected (PLIP)

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.15: 4 residues within 4Å: Chain A: E.105, H.106, S.109 Ligands: HEM.16 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.105, A:H.106, A:S.109, H2O.1, H2O.1

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.16: 24 residues within 4Å: Chain A: P.29, C.30, P.31, A.32, L.33, F.58, I.64, I.69, A.72, A.76, L.98, F.104, E.105, H.106, S.109, F.110, S.111, R.112, E.184, F.187, I.188, W.214, F.215 Ligands: MN.15 30 PLIP interactions: 30 interactions with chain A, Hydrophobic interactions: A:P.29, A:A.32, A:L.33, A:F.58, A:F.58, A:F.58, A:I.64, A:I.69, A:I.69, A:A.72, A:A.76, A:F.104, A:F.104, A:F.104, A:E.184, A:F.187, A:F.187, A:I.188, A:W.214, A:F.215 Hydrogen bonds: A:H.106, A:F.110, A:S.111, A:R.112 Water bridges: A:Q.181, A:E.184 Salt bridges: A:H.106 pi-Stacking: A:F.104, A:F.187 Metal complexes: A:C.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sundaramoorthy, M. et al., The crystal structure of chloroperoxidase: a heme peroxidase--cytochrome P450 functional hybrid. Structure (1995)

Release Date

1997-02-12

Peptides

CHLOROPEROXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CHLOROPEROXIDASE

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