SMTL ID : 1d0a.4 (3 other biounits)

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 (TRAF2) IN COMPLEX WITH A HUMAN OX40 PEPTIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x ACE- PRO- ILE- GLN- GLU- GLU: OX40L RECEPTOR PEPTIDE(Non-covalent)

ACE-PRO-ILE-GLN-GLU-GLU.1: 16 residues within 4Å: Chain A: R.60, Y.62, D.66, G.67, F.77, F.114, R.115, S.120, S.121, S.122, F.123, I.132, A.133, S.134, G.135, P.137 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.114, A:F.123, A:P.137 Hydrogen bonds: A:Y.62, A:D.66, A:S.122, A:S.122, A:A.133, A:A.133, A:G.135 Water bridges: A:R.60, A:D.66, A:D.66, A:T.68 Salt bridges: A:R.60 ACE-PRO-ILE-GLN-GLU-GLU.2: 16 residues within 4Å: Chain B: R.60, Y.62, D.66, G.67, F.77, F.114, R.115, S.120, S.121, S.122, F.123, I.132, A.133, S.134, G.135, P.137 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:F.77, B:F.114, B:F.123, B:P.137 Hydrogen bonds: B:Y.62, B:Y.62, B:D.66, B:D.66, B:S.122, B:S.122, B:A.133, B:A.133, B:G.135 Water bridges: B:D.66, B:D.66, B:T.68 Salt bridges: B:R.60 ACE-PRO-ILE-GLN-GLU-GLU.3: 16 residues within 4Å: Chain C: R.60, Y.62, D.66, G.67, F.77, F.114, R.115, D.117, S.120, S.122, F.123, I.132, A.133, S.134, G.135, P.137 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:F.77, C:F.114, C:F.123, C:A.133, C:P.137 Hydrogen bonds: C:Y.62, C:D.66, C:D.66, C:S.122, C:S.122, C:A.133, C:A.133, C:G.135 Water bridges: C:R.60, C:D.66, C:D.66, C:T.68 Salt bridges: C:R.60 ACE-PRO-ILE-GLN-GLU-GLU.4: 17 residues within 4Å: Chain D: R.60, Y.62, D.66, G.67, F.77, F.114, R.115, D.117, S.120, S.121, S.122, F.123, I.132, A.133, S.134, G.135, P.137 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:F.77, D:F.114, D:F.123 Hydrogen bonds: D:Y.62, D:Y.62, D:Y.62, D:D.66, D:S.122, D:S.122, D:A.133, D:A.133, D:G.135 Water bridges: D:S.134 Salt bridges: D:R.60 ACE-PRO-ILE-GLN-GLU-GLU.5: 16 residues within 4Å: Chain E: R.60, Y.62, D.66, G.67, F.77, F.114, R.115, D.117, S.120, S.121, S.122, I.132, A.133, S.134, G.135, P.137 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:F.77, E:F.114, E:I.132, E:P.137 Hydrogen bonds: E:Y.62, E:D.66, E:S.122, E:S.122, E:A.133, E:A.133, E:G.135 Water bridges: E:T.68 Salt bridges: E:R.60 ACE-PRO-ILE-GLN-GLU-GLU.6: 17 residues within 4Å: Chain F: R.60, Y.62, D.66, G.67, F.77, F.114, R.115, D.117, S.120, S.121, S.122, F.123, I.132, A.133, S.134, G.135, P.137 16 PLIP interactions: 15 interactions with chain F, 1 interactions with chain B Hydrophobic interactions: F:F.77, F:F.114, F:F.123, F:P.137 Hydrogen bonds: F:Y.62, F:Y.62, F:D.66, F:S.122, F:S.122, F:A.133, F:A.133, F:G.135 Water bridges: F:D.66, F:T.68, B:R.39 Salt bridges: F:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, H. et al., The structural basis for the recognition of diverse receptor sequences by TRAF2. Mol.Cell (1999)

Release Date

2000-03-08

Peptides

TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2

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