SMTL ID : 1d0i.1

CRYSTAL STRUCTURE OF TYPE II DEHYDROQUINASE FROM STREPTOMYCES COELICOLOR COMPLEXED WITH PHOSPHATE IONS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-12-mer

Ligands

16 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.2: 7 residues within 4Å: Chain A: H.58, E.59, G.60 Chain B: H.58, G.60 Chain C: H.58, G.60 Ligand excluded by PLIP PO4.4: 6 residues within 4Å: Chain B: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.5: 6 residues within 4Å: Chain C: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.6: 6 residues within 4Å: Chain D: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.8: 7 residues within 4Å: Chain D: H.58, G.60 Chain E: H.58, E.59, G.60 Chain F: H.58, G.60 Ligand excluded by PLIP PO4.9: 6 residues within 4Å: Chain E: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.10: 6 residues within 4Å: Chain F: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.11: 6 residues within 4Å: Chain G: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.12: 7 residues within 4Å: Chain G: H.58, G.60 Chain H: H.58, G.60 Chain I: H.58, E.59, G.60 Ligand excluded by PLIP PO4.14: 6 residues within 4Å: Chain H: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.15: 6 residues within 4Å: Chain I: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.16: 6 residues within 4Å: Chain J: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.18: 8 residues within 4Å: Chain J: H.58, G.60 Chain K: H.58, E.59, G.60 Chain L: H.58, E.59, G.60 Ligand excluded by PLIP PO4.19: 6 residues within 4Å: Chain K: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP PO4.20: 6 residues within 4Å: Chain L: Y.28, N.79, A.81, H.106, I.107, S.108 Ligand excluded by PLIP

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 9 residues within 4Å: Chain A: E.59, T.86, S.87 Chain B: E.59, T.86, S.87 Chain C: E.59, T.86, S.87 10 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C, 4 interactions with chain B Hydrogen bonds: A:E.59, A:T.86, C:T.86, C:T.86, B:T.86, B:T.86 Water bridges: A:V.88, C:V.88, B:E.59, B:V.88 TRS.7: 9 residues within 4Å: Chain D: E.59, T.86, S.87 Chain E: E.59, T.86, S.87 Chain F: E.59, T.86, S.87 10 PLIP interactions: 4 interactions with chain D, 2 interactions with chain F, 4 interactions with chain E Hydrogen bonds: D:T.86, D:T.86, F:T.86, E:E.59, E:T.86, E:T.86 Water bridges: D:E.59, D:V.88, F:V.88, E:V.88 TRS.13: 9 residues within 4Å: Chain G: E.59, T.86, S.87 Chain H: E.59, T.86, S.87 Chain I: E.59, T.86, S.87 9 PLIP interactions: 2 interactions with chain I, 5 interactions with chain H, 2 interactions with chain G Hydrogen bonds: I:T.86, H:E.59, H:T.86, H:T.86, G:T.86 Water bridges: I:V.88, H:E.59, H:V.88, G:V.88 TRS.17: 9 residues within 4Å: Chain J: E.59, T.86, S.87 Chain K: E.59, T.86, S.87 Chain L: E.59, T.86, S.87 9 PLIP interactions: 3 interactions with chain L, 2 interactions with chain J, 4 interactions with chain K Hydrogen bonds: L:E.59, L:T.86, J:T.86, K:T.86, K:T.86 Water bridges: L:V.88, J:V.88, K:E.59, K:V.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roszak, A.W. et al., The structure and mechanism of the type II dehydroquinase from Streptomyces coelicolor. Structure (2002)

Release Date

2000-09-13

Peptides

TYPE II 3-DEHYDROQUINATE HYDRATASE: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

TYPE II 3-DEHYDROQUINATE HYDRATASE

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