SMTL ID : 1d1t.2 (3 other biounits)

MUTANT OF HUMAN SIGMA ALCOHOL DEHYDROGENASE WITH LEUCINE AT POSITION 141

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.97, R.98, C.100, C.103, C.111, I.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.2: 6 residues within 4Å: Chain A: C.46, T.48, H.67, C.173 Ligands: ACT.6, NAD.12 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.46, A:H.67, A:C.173 ZN.3: 3 residues within 4Å: Chain A: H.137 Chain B: E.356, E.359 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.356, B:E.356, B:E.359, A:H.137, H2O.2 ZN.4: 1 residues within 4Å: Chain A: D.340 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.340, A:D.340 ZN.5: 5 residues within 4Å: Chain A: E.16 Ligands: CAC.8, CAC.9, CAC.10, ZN.17 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.16, A:E.16 ZN.13: 6 residues within 4Å: Chain B: C.97, R.98, C.100, C.103, C.111, I.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111 ZN.14: 6 residues within 4Å: Chain B: C.46, T.48, H.67, C.173 Ligands: ACT.20, NAD.23 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.46, B:H.67, B:C.173 ZN.15: 3 residues within 4Å: Chain B: H.270 Ligands: ACT.21, NAD.23 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.270, H2O.7 ZN.16: 2 residues within 4Å: Chain B: H.137 Ligands: ACT.22 4 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: B:H.137, H2O.6, H2O.8, ACT.22 ZN.17: 5 residues within 4Å: Chain B: H.347 Ligands: ZN.5, CAC.8, CAC.9, CAC.10 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.347

7 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 9 residues within 4Å: Chain A: C.46, T.48, H.67, F.93, L.140, C.173, V.293 Ligands: ZN.2, NAD.12 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.93, A:L.140 Hydrogen bonds: A:T.48 Salt bridges: A:H.67 ACT.7: 3 residues within 4Å: Chain A: L.223, H.270 Ligands: NAD.12 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.270 Salt bridges: A:H.270 ACT.18: 3 residues within 4Å: Chain B: E.99, R.113 Ligands: ACT.19 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.99 Salt bridges: B:R.113 ACT.19: 4 residues within 4Å: Chain B: K.34, E.99, R.113 Ligands: ACT.18 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.34 Hydrogen bonds: B:R.113 Salt bridges: B:K.34 ACT.20: 9 residues within 4Å: Chain B: C.46, T.48, H.67, F.93, L.140, C.173, V.293 Ligands: ZN.14, NAD.23 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:T.48, B:F.93, B:L.140 Hydrogen bonds: B:T.48 Salt bridges: B:H.67 ACT.21: 2 residues within 4Å: Chain B: H.270 Ligands: ZN.15 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.270 ACT.22: 2 residues within 4Å: Chain B: H.137 Ligands: ZN.16 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.60, B:H.137

4 x CAC: CACODYLATE ION(Non-covalent)

CAC.8: 10 residues within 4Å: Chain A: E.16, F.61, P.62 Chain B: H.347, E.356, Q.365 Ligands: ZN.5, CAC.9, CAC.10, ZN.17 No protein-ligand interaction detected (PLIP) CAC.9: 6 residues within 4Å: Chain A: E.16 Chain B: H.347 Ligands: ZN.5, CAC.8, CAC.10, ZN.17 No protein-ligand interaction detected (PLIP) CAC.10: 6 residues within 4Å: Chain A: E.16 Chain B: H.347 Ligands: ZN.5, CAC.8, CAC.9, ZN.17 No protein-ligand interaction detected (PLIP) CAC.11: 3 residues within 4Å: Chain A: C.100, N.101, I.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.101, A:A.102

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.12: 30 residues within 4Å: Chain A: C.46, R.47, T.48, H.51, C.173, T.177, G.198, L.199, G.200, G.201, V.202, D.222, L.223, N.224, K.227, V.267, I.268, G.269, H.270, V.291, G.292, V.293, C.316, V.317, F.318, L.361, R.368 Ligands: ZN.2, ACT.6, ACT.7 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.177, A:V.202 Hydrogen bonds: A:R.47, A:H.51, A:T.177, A:L.199, A:G.200, A:G.201, A:V.202, A:G.203, A:L.223, A:K.227, A:I.268, A:H.270, A:V.293, A:C.316, A:F.318 Water bridges: A:K.227, A:I.367, A:R.368, A:R.368 Salt bridges: A:R.47, A:R.368 NAD.23: 31 residues within 4Å: Chain B: C.46, R.47, T.48, H.51, C.173, T.177, G.198, L.199, G.200, G.201, V.202, D.222, L.223, N.224, K.227, V.267, I.268, G.269, H.270, T.273, V.291, G.292, V.293, C.316, V.317, F.318, L.361, R.368 Ligands: ZN.14, ZN.15, ACT.20 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:T.177, B:V.202 Hydrogen bonds: B:R.47, B:H.51, B:L.199, B:L.199, B:G.201, B:V.202, B:L.223, B:K.227, B:I.268, B:H.270, B:V.291, B:V.293, B:F.318 Water bridges: B:G.200, B:G.203, B:R.368 Salt bridges: B:R.47, B:K.227, B:R.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, P.T. et al., Methionine-141 directly influences the binding of 4-methylpyrazole in human sigma sigma alcohol dehydrogenase. Protein Sci. (1999)

Release Date

1999-09-29

Peptides

ALCOHOL DEHYDROGENASE CLASS IV SIGMA CHAIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

ALCOHOL DEHYDROGENASE CLASS IV SIGMA CHAIN

Related Entries With Identical Sequence