SMTL ID : 1d1t.3 (3 other biounits)

MUTANT OF HUMAN SIGMA ALCOHOL DEHYDROGENASE WITH LEUCINE AT POSITION 141

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

11 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.97, R.98, C.100, C.103, C.111, I.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.2: 6 residues within 4Å: Chain A: C.46, T.48, H.67, C.173 Ligands: ACT.7, NAD.12 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:C.46, A:H.67, A:C.173, ACT.7 ZN.3: 3 residues within 4Å: Chain A: H.270 Ligands: ACT.9, NAD.12 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.270, H2O.2 ZN.4: 3 residues within 4Å: Chain A: H.137 Ligands: ACT.8, ACT.10 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Ligand interactions Metal complexes: A:H.137, ACT.8, ACT.10 ZN.5: 3 residues within 4Å: Chain B: H.270 Ligands: ACT.19, NAD.24 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.270, H2O.6 ZN.6: 3 residues within 4Å: Chain A: E.356, E.359, L.360 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.356, A:E.356, A:E.359, H2O.2 ZN.13: 6 residues within 4Å: Chain B: C.97, R.98, C.100, C.103, C.111, I.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111 ZN.14: 6 residues within 4Å: Chain B: C.46, T.48, H.67, C.173 Ligands: ACT.18, NAD.24 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.46, B:H.67, B:C.173 ZN.15: 1 residues within 4Å: Chain B: H.137 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.137, H2O.5 ZN.16: 1 residues within 4Å: Chain B: D.340 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.340, B:D.340 ZN.17: 4 residues within 4Å: Chain B: E.16 Ligands: CAC.20, CAC.21, CAC.22 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.16, B:E.16

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 9 residues within 4Å: Chain A: C.46, T.48, H.67, F.93, L.140, C.173, V.293 Ligands: ZN.2, NAD.12 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.93, A:L.140 Salt bridges: A:H.67 ACT.8: 7 residues within 4Å: Chain A: K.60, V.121, G.125, T.127, H.137 Ligands: ZN.4, ACT.10 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.121 Salt bridges: A:K.60, A:H.137 ACT.9: 4 residues within 4Å: Chain A: L.223, H.270 Ligands: ZN.3, NAD.12 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.223 Salt bridges: A:H.270 ACT.10: 5 residues within 4Å: Chain A: K.60, F.61, H.137 Ligands: ZN.4, ACT.8 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.137 ACT.18: 9 residues within 4Å: Chain B: C.46, T.48, H.67, F.93, L.140, C.173, V.293 Ligands: ZN.14, NAD.24 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.93, B:L.140 Hydrogen bonds: B:T.48 Salt bridges: B:H.67 ACT.19: 4 residues within 4Å: Chain B: L.223, H.270 Ligands: ZN.5, NAD.24 2 PLIP interactions: 2 interactions with chain B Water bridges: B:H.270 Salt bridges: B:H.270

5 x CAC: CACODYLATE ION(Non-covalent)

CAC.11: 3 residues within 4Å: Chain A: M.232, G.235, A.236 No protein-ligand interaction detected (PLIP) CAC.20: 6 residues within 4Å: Chain B: E.16, F.61, P.62 Ligands: ZN.17, CAC.21, CAC.22 No protein-ligand interaction detected (PLIP) CAC.21: 4 residues within 4Å: Chain B: E.16 Ligands: ZN.17, CAC.20, CAC.22 No protein-ligand interaction detected (PLIP) CAC.22: 4 residues within 4Å: Chain B: E.16 Ligands: ZN.17, CAC.20, CAC.21 No protein-ligand interaction detected (PLIP) CAC.23: 5 residues within 4Å: Chain A: G.258, N.259 Chain B: C.100, N.101, I.112 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.259, B:N.101, B:A.102 Water bridges: A:H.282

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.12: 32 residues within 4Å: Chain A: C.46, R.47, T.48, H.51, C.173, T.177, G.198, L.199, G.200, G.201, V.202, D.222, L.223, K.227, V.267, I.268, G.269, H.270, T.273, V.291, G.292, V.293, C.316, V.317, F.318, L.361, R.368 Chain B: F.308 Ligands: ZN.2, ZN.3, ACT.7, ACT.9 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:T.177, A:V.202 Hydrogen bonds: A:R.47, A:H.51, A:L.199, A:G.201, A:V.202, A:L.223, A:K.227, A:K.227, A:I.268, A:V.293, A:C.316, A:F.318 Water bridges: A:R.47, A:G.200, A:G.203, A:R.368 Salt bridges: A:R.47, A:R.368 NAD.24: 32 residues within 4Å: Chain A: F.308 Chain B: C.46, R.47, T.48, H.51, C.173, T.177, G.198, L.199, G.200, G.201, V.202, D.222, L.223, N.224, K.227, V.267, I.268, G.269, H.270, V.291, G.292, V.293, C.316, V.317, F.318, L.361, R.368 Ligands: ZN.5, ZN.14, ACT.18, ACT.19 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:T.177, B:V.202 Hydrogen bonds: B:R.47, B:H.51, B:T.177, B:L.199, B:G.200, B:G.201, B:V.202, B:G.203, B:L.223, B:K.227, B:I.268, B:H.270, B:V.293, B:C.316, B:F.318 Water bridges: B:K.227, B:I.367, B:R.368, B:R.368 Salt bridges: B:R.47, B:R.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, P.T. et al., Methionine-141 directly influences the binding of 4-methylpyrazole in human sigma sigma alcohol dehydrogenase. Protein Sci. (1999)

Release Date

1999-09-29

Peptides

ALCOHOL DEHYDROGENASE CLASS IV SIGMA CHAIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALCOHOL DEHYDROGENASE CLASS IV SIGMA CHAIN

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