SMTL ID : 1d9e.1

STRUCTURE OF E. COLI KDO8P SYNTHASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.115, A.116, K.138, R.168 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.116 Water bridges: A:N.62, A:Q.113, A:Q.113, A:F.117, A:K.138, A:R.168 Salt bridges: A:K.138, A:R.168, A:H.202 SO4.2: 2 residues within 4Å: Chain A: R.63, S.64 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.64, A:S.64 Salt bridges: A:R.63 SO4.3: 5 residues within 4Å: Chain B: P.115, A.116, K.138, R.168, H.202 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:A.116 Water bridges: B:Q.113, B:Q.113, B:F.117 Salt bridges: B:K.138, B:R.168, B:H.202 SO4.4: 2 residues within 4Å: Chain B: S.30, R.31 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.31 Water bridges: B:D.32 Salt bridges: B:R.31 SO4.5: 2 residues within 4Å: Chain B: R.63, S.64 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.64, B:S.68 Salt bridges: B:R.63 SO4.6: 4 residues within 4Å: Chain C: P.115, A.116, K.138, R.168 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:A.116 Water bridges: C:Q.113, C:Q.113, C:R.168, C:R.168, C:H.202 Salt bridges: C:K.138, C:R.168, C:H.202 SO4.7: 2 residues within 4Å: Chain C: S.30, R.31 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.31 Salt bridges: C:R.31 SO4.8: 2 residues within 4Å: Chain C: R.63, S.64 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.64, C:S.64 Salt bridges: C:R.63 SO4.9: 4 residues within 4Å: Chain D: P.115, A.116, K.138, R.168 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:A.116 Water bridges: D:Q.113, D:Q.113, D:F.117 Salt bridges: D:K.138, D:R.168, D:H.202 SO4.10: 2 residues within 4Å: Chain D: R.63, S.64 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.64 Salt bridges: D:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Radaev, S. et al., Structure and mechanism of 3-deoxy-D-manno-octulosonate 8-phosphate synthase. J.Biol.Chem. (2000)

Release Date

2000-05-10

Peptides

3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE SYNTHASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE SYNTHASE

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