SMTL ID : 1de5.1

L-RHAMNOSE ISOMERASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x RNT: L-RHAMNITOL(Non-covalent)

RNT.1: 13 residues within 4Å: Chain A: W.47, I.66, H.102, W.192, E.233, K.235, D.266, H.269, H.293, D.301, D.333, F.335 Ligands: ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.47 Hydrogen bonds: A:K.235 Water bridges: A:H.102, A:E.233, A:H.269, A:D.301, A:D.303 RNT.3: 13 residues within 4Å: Chain B: W.47, I.66, H.102, W.192, E.233, K.235, D.266, H.269, H.293, D.301, D.333, F.335 Ligands: ZN.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.47 Hydrogen bonds: B:E.233, B:K.235, B:D.333 Water bridges: B:H.102, B:E.233 RNT.5: 13 residues within 4Å: Chain C: W.47, I.66, H.102, W.192, E.233, K.235, D.266, H.269, H.293, D.301, D.333, F.335 Ligands: ZN.6 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:W.47 Hydrogen bonds: C:K.235 RNT.7: 13 residues within 4Å: Chain D: W.47, I.66, H.102, W.192, E.233, K.235, D.266, H.269, H.293, D.301, D.333, F.335 Ligands: ZN.8 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:W.47 Hydrogen bonds: D:K.235 Water bridges: D:H.102, D:E.233

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: E.233, D.266, H.269, H.293, D.333 Ligands: RNT.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.233, A:D.266, A:H.293, A:D.333 ZN.4: 6 residues within 4Å: Chain B: E.233, D.266, H.269, H.293, D.333 Ligands: RNT.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.233, B:D.266, B:H.293, B:D.333 ZN.6: 5 residues within 4Å: Chain C: E.233, D.266, H.293, D.333 Ligands: RNT.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.233, C:D.266, C:H.293, C:D.333 ZN.8: 6 residues within 4Å: Chain D: E.233, D.266, H.269, H.293, D.333 Ligands: RNT.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.233, D:D.266, D:H.293, D:D.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Korndorfer, I.P. et al., The structure of rhamnose isomerase from Escherichia coli and its relation with xylose isomerase illustrates a change between inter and intra-subunit complementation during evolution. J.Mol.Biol. (2000)

Release Date

2000-08-09

Peptides

L-RHAMNOSE ISOMERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-RHAMNOSE ISOMERASE

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