SMTL ID : 1de6.1

L-RHAMNOSE ISOMERASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x RNS: L-RHAMNOSE(Non-covalent)

RNS.1: 13 residues within 4Å: Chain A: W.47, I.66, H.102, W.192, E.233, K.235, D.266, H.269, D.301, D.333, F.335 Ligands: ZN.2, MN.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.233 Water bridges: A:H.102, A:N.139 RNS.4: 13 residues within 4Å: Chain B: W.47, I.66, H.102, W.192, E.233, K.235, D.266, H.269, D.301, D.333, F.335 Ligands: ZN.5, MN.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.233, B:H.269 RNS.7: 12 residues within 4Å: Chain C: I.66, H.102, W.192, E.233, K.235, D.266, H.269, D.301, D.333, F.335 Ligands: ZN.8, MN.9 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.233, C:H.269 Water bridges: C:H.102, C:N.139 RNS.10: 12 residues within 4Å: Chain D: I.66, H.102, W.192, E.233, K.235, D.266, H.269, D.301, D.333, F.335 Ligands: ZN.11, MN.12 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.233, D:H.269 Water bridges: D:H.102, D:N.190

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: E.233, D.266, H.269, H.293, D.333 Ligands: RNS.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.233, A:D.266, A:H.293, A:D.333 ZN.5: 5 residues within 4Å: Chain B: E.233, D.266, H.293, D.333 Ligands: RNS.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.233, B:E.233, B:D.266, B:H.293, B:D.333 ZN.8: 6 residues within 4Å: Chain C: E.233, D.266, H.269, H.293, D.333 Ligands: RNS.7 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.233, C:D.266, C:H.293, C:D.333 ZN.11: 5 residues within 4Å: Chain D: E.233, D.266, H.293, D.333 Ligands: RNS.10 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.233, D:D.266, D:H.293, D:D.333

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain A: H.269, D.301, D.303 Ligands: RNS.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.269, A:D.301, A:D.301, A:D.303 MN.6: 4 residues within 4Å: Chain B: H.269, D.301, D.303 Ligands: RNS.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.269, B:D.301, B:D.301, B:D.303, B:D.303 MN.9: 4 residues within 4Å: Chain C: H.269, D.301, D.303 Ligands: RNS.7 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.269, C:D.301, C:D.301, C:D.303 MN.12: 4 residues within 4Å: Chain D: H.269, D.301, D.303 Ligands: RNS.10 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.269, D:D.301, D:D.301, D:D.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Korndorfer, I.P. et al., The structure of rhamnose isomerase from Escherichia coli and its relation with xylose isomerase illustrates a change between inter and intra-subunit complementation during evolution. J.Mol.Biol. (2000)

Release Date

2000-08-09

Peptides

L-RHAMNOSE ISOMERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-RHAMNOSE ISOMERASE

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