SMTL ID : 1dih.1

THREE-DIMENSIONAL STRUCTURE OF E. COLI DIHYDRODIPICOLINATE REDUCTASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 20 residues within 4Å: Chain A: G.12, G.15, R.16, M.17, E.38, R.39, F.79, T.80, R.81, E.83, G.84, G.102, T.103, T.104, A.126, A.127, N.128, F.129, R.240, F.243 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.79, A:F.243 Hydrogen bonds: A:G.12, A:R.16, A:M.17, A:R.39, A:R.39, A:T.80, A:G.102, A:T.104, A:F.129 Salt bridges: A:R.16, A:R.16, A:R.39, A:R.81, A:R.240 pi-Cation interactions: A:R.39, A:R.39 NDP.2: 20 residues within 4Å: Chain B: G.12, G.15, R.16, M.17, E.38, R.39, F.79, T.80, R.81, E.83, G.84, G.102, T.103, T.104, A.126, A.127, N.128, F.129, R.240, F.243 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:F.79, B:F.243 Hydrogen bonds: B:G.12, B:R.16, B:M.17, B:R.39, B:R.39, B:T.80, B:G.102, B:T.104, B:F.129 Salt bridges: B:R.16, B:R.16, B:R.39, B:R.81, B:R.240 pi-Cation interactions: B:R.39, B:R.39 NDP.3: 20 residues within 4Å: Chain C: G.12, G.15, R.16, M.17, E.38, R.39, F.79, T.80, R.81, E.83, G.84, G.102, T.103, T.104, A.126, A.127, N.128, F.129, R.240, F.243 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:F.79, C:F.243 Hydrogen bonds: C:G.12, C:R.16, C:M.17, C:R.39, C:R.39, C:T.80, C:G.102, C:T.104, C:F.129 Salt bridges: C:R.16, C:R.16, C:R.39, C:R.81, C:R.240 pi-Cation interactions: C:R.39, C:R.39 NDP.4: 20 residues within 4Å: Chain D: G.12, G.15, R.16, M.17, E.38, R.39, F.79, T.80, R.81, E.83, G.84, G.102, T.103, T.104, A.126, A.127, N.128, F.129, R.240, F.243 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:F.79, D:F.243 Hydrogen bonds: D:G.12, D:R.16, D:M.17, D:R.39, D:R.39, D:T.80, D:G.102, D:T.104, D:F.129 Salt bridges: D:R.16, D:R.16, D:R.39, D:R.81, D:R.240 pi-Cation interactions: D:R.39, D:R.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scapin, G. et al., Three-dimensional structure of Escherichia coli dihydrodipicolinate reductase. Biochemistry (1995)

Release Date

1995-09-15

Peptides

DIHYDRODIPICOLINATE REDUCTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

DIHYDRODIPICOLINATE REDUCTASE

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