- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-BMA-MAN.2: 10 residues within 4Å:- Chain A: E.109, N.113, Y.116, M.185, F.189
- Chain B: L.207, E.208, Y.211, Q.212, P.239
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:M.185
- Hydrogen bonds: B:E.208, B:P.239
NAG-NAG-BMA-BMA-MAN.11: 10 residues within 4Å:- Chain A: L.207, E.208, Y.211, Q.212, P.239
- Chain B: E.109, N.113, Y.116, M.185, F.189
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:E.208, A:E.208, A:P.239
- Hydrophobic interactions: B:M.185
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.3: 5 residues within 4Å:- Chain A: Y.371, Q.375, N.379, M.382, D.385
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.371, A:Y.371, A:Q.375
NAG-NAG.12: 5 residues within 4Å:- Chain B: Y.371, Q.375, N.379, M.382, D.385
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.371, B:Q.375
- 8 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.4: 4 residues within 4Å:- Chain A: S.56, F.57, F.60
- Ligands: BOG.7
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.60
BOG.5: 10 residues within 4Å:- Chain A: P.55, I.58, W.69, L.84, V.88, R.89, L.92, G.440, E.493
- Ligands: BOG.6
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.58, A:W.69, A:L.84
- Hydrogen bonds: A:V.88
- Water bridges: A:G.440
- Salt bridges: A:R.89
BOG.6: 4 residues within 4Å:- Chain A: I.58, L.84, V.88
- Ligands: BOG.5
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.84
BOG.7: 8 residues within 4Å:- Chain A: F.60, L.61, H.64, G.65, W.67, L.68, V.72
- Ligands: BOG.4
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.61, A:L.61, A:L.68, A:V.72
- Hydrogen bonds: A:G.65
BOG.13: 4 residues within 4Å:- Chain B: S.56, F.57, F.60
- Ligands: BOG.16
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.60
BOG.14: 10 residues within 4Å:- Chain B: P.55, I.58, W.69, L.84, V.88, R.89, L.92, G.440, E.493
- Ligands: BOG.15
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.58, B:W.69, B:L.84
- Hydrogen bonds: B:V.88
- Water bridges: B:G.440
- Salt bridges: B:R.89
BOG.15: 4 residues within 4Å:- Chain B: I.58, L.84, V.88
- Ligands: BOG.14
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.84
BOG.16: 8 residues within 4Å:- Chain B: F.60, L.61, H.64, G.65, W.67, L.68, V.72
- Ligands: BOG.13
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.61, B:L.61, B:L.68, B:V.72
- Hydrogen bonds: B:G.65
- 2 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)
COH.8: 18 residues within 4Å:- Chain A: Y.117, Q.172, H.176, F.179, K.180, T.181, L.264, N.351, Y.354, H.355, W.356, H.357, M.360, L.377, I.413, H.415, V.416, D.419
17 PLIP interactions:17 interactions with chain A,- Hydrophobic interactions: A:Q.172, A:L.264, A:W.356, A:L.377, A:I.413, A:V.416
- Hydrogen bonds: A:Y.117, A:T.181, A:T.181, A:N.351, A:D.419, A:D.419
- pi-Stacking: A:H.176, A:H.357, A:H.357, A:H.357
- Metal complexes: A:H.357
COH.17: 18 residues within 4Å:- Chain B: Y.117, Q.172, H.176, F.179, K.180, T.181, L.264, N.351, Y.354, H.355, W.356, H.357, M.360, L.377, I.413, H.415, V.416, D.419
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:Q.172, B:L.264, B:W.356, B:L.377, B:I.413, B:V.416
- Hydrogen bonds: B:T.181, B:T.181, B:T.181, B:N.351, B:D.419
- pi-Stacking: B:H.176, B:H.357, B:H.357, B:H.357
- Metal complexes: B:H.357
- 2 x ACD: ARACHIDONIC ACID(Non-covalent)
ACD.9: 23 residues within 4Å:- Chain A: V.85, R.89, F.174, F.178, V.313, Y.317, V.318, L.321, S.322, Y.324, N.344, I.346, F.350, Y.354, W.356, M.491, I.492, G.495, A.496, S.499, L.500, G.502, L.503
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:F.174, A:F.174, A:F.178, A:F.178, A:V.313, A:Y.317, A:V.318, A:L.321, A:I.346, A:F.350, A:F.350, A:Y.354, A:W.356, A:I.492, A:A.496, A:L.503, A:L.503
- Salt bridges: A:R.89
ACD.18: 23 residues within 4Å:- Chain B: V.85, R.89, F.174, F.178, V.313, Y.317, V.318, L.321, S.322, Y.324, N.344, I.346, F.350, Y.354, W.356, M.491, I.492, G.495, A.496, S.499, L.500, G.502, L.503
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:F.174, B:F.174, B:F.178, B:F.178, B:V.313, B:Y.317, B:V.318, B:L.321, B:I.346, B:F.350, B:F.350, B:Y.354, B:W.356, B:I.492, B:A.496, B:L.503, B:L.503
- Hydrogen bonds: B:Y.324
- Salt bridges: B:R.89
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malkowski, M.G. et al., The productive conformation of arachidonic acid bound to prostaglandin synthase. Science (2000)
- Release Date
- 2000-09-22
- Peptides
- PROSTAGLANDIN H2 SYNTHASE-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 2 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)
- 2 x ACD: ARACHIDONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malkowski, M.G. et al., The productive conformation of arachidonic acid bound to prostaglandin synthase. Science (2000)
- Release Date
- 2000-09-22
- Peptides
- PROSTAGLANDIN H2 SYNTHASE-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A