SMTL ID : 1dlg.3 (2 other biounits)

CRYSTAL STRUCTURE OF THE C115S ENTEROBACTER CLOACAE MURA IN THE UN-LIGANDED STATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

18 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: E.135, K.137 Chain C: K.137 Ligand excluded by PLIP PO4.2: 5 residues within 4Å: Chain A: R.401, E.403, D.404, R.407, R.415 Ligand excluded by PLIP PO4.3: 3 residues within 4Å: Chain A: S.162, V.163, G.164 Ligand excluded by PLIP PO4.5: 3 residues within 4Å: Chain B: E.135, K.137 Chain D: K.137 Ligand excluded by PLIP PO4.6: 5 residues within 4Å: Chain B: R.401, E.403, D.404, R.407, R.415 Ligand excluded by PLIP PO4.7: 3 residues within 4Å: Chain B: S.162, V.163, G.164 Ligand excluded by PLIP PO4.9: 3 residues within 4Å: Chain C: N.253, D.278 Ligands: HAI.15 Ligand excluded by PLIP PO4.10: 3 residues within 4Å: Chain C: N.23, D.305, R.371 Ligand excluded by PLIP PO4.11: 6 residues within 4Å: Chain A: G.118, A.119 Chain C: A.119, L.124, D.159, K.160 Ligand excluded by PLIP PO4.12: 4 residues within 4Å: Chain C: A.92, W.95, H.125, G.164 Ligand excluded by PLIP PO4.13: 4 residues within 4Å: Chain C: G.319, T.320, H.355, G.356 Ligand excluded by PLIP PO4.14: 3 residues within 4Å: Chain C: Y.393, H.394, R.397 Ligand excluded by PLIP PO4.17: 3 residues within 4Å: Chain D: N.253, D.278 Ligands: HAI.23 Ligand excluded by PLIP PO4.18: 3 residues within 4Å: Chain D: N.23, D.305, R.371 Ligand excluded by PLIP PO4.19: 6 residues within 4Å: Chain B: G.118, A.119 Chain D: A.119, L.124, D.159, K.160 Ligand excluded by PLIP PO4.20: 4 residues within 4Å: Chain D: A.92, W.95, H.125, G.164 Ligand excluded by PLIP PO4.21: 4 residues within 4Å: Chain D: G.319, T.320, H.355, G.356 Ligand excluded by PLIP PO4.22: 3 residues within 4Å: Chain D: Y.393, H.394, R.397 Ligand excluded by PLIP

6 x HAI: CYCLOHEXYLAMMONIUM ION(Non-covalent)

HAI.4: 5 residues within 4Å: Chain A: F.80, Q.106, G.107, Q.108, K.144 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.80, A:Q.106, A:Q.108, A:K.144 HAI.8: 5 residues within 4Å: Chain B: F.80, Q.106, G.107, Q.108, K.144 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.80, B:Q.106, B:Q.108, B:K.144 HAI.15: 3 residues within 4Å: Chain C: V.250, W.279 Ligands: PO4.9 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.250, C:W.279 Water bridges: C:N.253 HAI.16: 4 residues within 4Å: Chain C: V.250, E.274, W.279, S.281 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:W.279, C:W.279 Hydrogen bonds: C:S.281 HAI.23: 3 residues within 4Å: Chain D: V.250, W.279 Ligands: PO4.17 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:V.250, D:W.279 Water bridges: D:N.253 HAI.24: 4 residues within 4Å: Chain D: V.250, E.274, W.279, S.281 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:W.279, D:W.279 Hydrogen bonds: D:S.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Role of the loop containing residue 115 in the induced-fit mechanism of the bacterial cell wall biosynthetic enzyme MurA. Biochemistry (2000)

Release Date

2000-04-12

Peptides

UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE MURA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE MURA

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