SMTL ID : 1ryw.2 (1 other biounit)

C115S MurA liganded with reaction products

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: K.22, R.120, R.397 Ligands: EPU.2, GOL.3 8 PLIP interactions: 8 interactions with chain A Water bridges: A:D.49, A:S.115, A:R.120, A:R.120, A:R.397 Salt bridges: A:K.22, A:R.120, A:R.397 PO4.5: 4 residues within 4Å: Chain B: K.22, R.120 Ligands: EPU.6, GOL.7 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.120 Salt bridges: B:K.22, B:R.120 PO4.8: 5 residues within 4Å: Chain C: K.22, R.120, R.397 Ligands: EPU.10, GOL.11 6 PLIP interactions: 6 interactions with chain C Water bridges: C:R.397, C:R.397, C:R.397 Salt bridges: C:K.22, C:R.120, C:R.397 PO4.9: 5 residues within 4Å: Chain C: G.114, S.115, A.116 Chain D: M.366, T.368 2 PLIP interactions: 2 interactions with chain D Water bridges: D:R.391 Salt bridges: D:R.391 PO4.12: 5 residues within 4Å: Chain D: K.22, R.120, R.397 Ligands: EPU.13, GOL.14 3 PLIP interactions: 3 interactions with chain D Salt bridges: D:K.22, D:R.120, D:R.397

4 x EPU: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID(Non-covalent)

EPU.2: 24 residues within 4Å: Chain A: K.22, N.23, L.26, W.95, I.117, R.120, P.121, V.122, D.123, L.124, H.125, K.160, S.162, V.163, G.164, T.304, D.305, I.327, F.328, R.331, L.370, R.371 Ligands: PO4.1, GOL.3 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:L.26, A:W.95, A:I.117 Hydrogen bonds: A:N.23, A:D.123, A:L.124, A:H.125, A:K.160, A:S.162, A:V.163, A:G.164, A:E.188, A:D.305, A:R.331 Water bridges: A:R.120, A:R.120, A:R.120, A:S.162, A:R.232, A:R.232, A:T.304, A:T.304, A:T.304, A:E.329, A:R.331, A:R.331 Salt bridges: A:K.22, A:R.120, A:R.120, A:R.331, A:R.371 EPU.6: 23 residues within 4Å: Chain B: K.22, N.23, L.26, W.95, R.120, P.121, V.122, D.123, L.124, H.125, K.160, S.162, V.163, G.164, T.304, D.305, I.327, F.328, R.331, L.370, R.371 Ligands: PO4.5, GOL.7 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:L.26, B:W.95 Hydrogen bonds: B:N.23, B:N.23, B:D.123, B:L.124, B:H.125, B:K.160, B:S.162, B:V.163, B:G.164, B:D.305, B:R.331 Water bridges: B:R.120, B:R.120, B:R.120, B:S.162, B:E.188, B:E.188, B:R.232, B:R.232, B:T.304, B:T.304, B:T.304, B:I.327, B:E.329, B:E.329 Salt bridges: B:K.22, B:R.120, B:R.120, B:R.331, B:R.371 EPU.10: 24 residues within 4Å: Chain C: K.22, N.23, L.26, W.95, I.117, R.120, P.121, V.122, D.123, L.124, H.125, K.160, S.162, V.163, G.164, T.304, D.305, I.327, F.328, R.331, L.370, R.371 Ligands: PO4.8, GOL.11 35 PLIP interactions: 35 interactions with chain C Hydrophobic interactions: C:L.26, C:W.95, C:I.117 Hydrogen bonds: C:N.23, C:N.23, C:D.123, C:L.124, C:H.125, C:S.162, C:V.163, C:G.164, C:E.188, C:E.188, C:D.305, C:R.331 Water bridges: C:R.91, C:R.120, C:R.120, C:R.120, C:K.160, C:K.160, C:K.160, C:K.160, C:R.232, C:R.232, C:T.304, C:T.304, C:T.304, C:I.327, C:E.329, C:E.329 Salt bridges: C:K.22, C:R.120, C:R.331, C:R.371 EPU.13: 24 residues within 4Å: Chain D: K.22, N.23, L.26, W.95, R.120, P.121, V.122, D.123, L.124, H.125, K.160, S.162, V.163, G.164, E.188, T.304, D.305, I.327, F.328, R.331, L.370, R.371 Ligands: PO4.12, GOL.14 32 PLIP interactions: 32 interactions with chain D Hydrophobic interactions: D:L.26, D:W.95 Hydrogen bonds: D:N.23, D:N.23, D:D.123, D:L.124, D:H.125, D:S.162, D:V.163, D:G.164, D:E.188, D:D.305, D:R.331 Water bridges: D:R.91, D:R.120, D:R.120, D:R.120, D:K.160, D:K.160, D:K.160, D:K.160, D:R.232, D:R.232, D:T.304, D:T.304, D:E.329, D:R.331 Salt bridges: D:K.22, D:R.120, D:R.120, D:R.331, D:R.371

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: R.91, A.92, I.94, W.95, R.120, H.125, G.164 Ligands: PO4.1, EPU.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.91, A:W.95, A:R.120 Water bridges: A:R.91, A:H.125 GOL.4: 2 residues within 4Å: Chain A: R.252, S.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.252, A:R.252, A:S.281 GOL.7: 9 residues within 4Å: Chain B: R.91, A.92, I.94, W.95, R.120, H.125, G.164 Ligands: PO4.5, EPU.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.91, B:W.95, B:R.120 Water bridges: B:R.120, B:H.125 GOL.11: 8 residues within 4Å: Chain C: R.91, A.92, W.95, R.120, H.125, G.164 Ligands: PO4.8, EPU.10 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.91, C:W.95, C:R.120 Water bridges: C:R.91, C:H.125, C:G.164 GOL.14: 9 residues within 4Å: Chain D: R.91, A.92, I.94, W.95, R.120, H.125, G.164 Ligands: PO4.12, EPU.13 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.91, D:W.95, D:R.120 Water bridges: D:G.164, D:G.164 GOL.15: 3 residues within 4Å: Chain D: V.250, R.252, W.279 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.252, D:R.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eschenburg, S. et al., Evidence That the Fosfomycin Target Cys115 in UDP-N-acetylglucosamine Enolpyruvyl Transferase (MurA) Is Essential for Product Release. J.Biol.Chem. (2005)

Release Date

2004-11-09

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

UDP-N-acetylglucosamine 1-carboxyvinyltransferase

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