SMTL ID : 1dm3.1

ACETYLATED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH ACETYL-COA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.257, A.259, E.260, R.263 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.257 Water bridges: A:S.106, A:S.257, A:R.263 Salt bridges: A:R.263 SO4.2: 2 residues within 4Å: Chain A: K.295, R.299 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.295, A:R.299 SO4.3: 4 residues within 4Å: Chain A: R.38, I.196, V.197, P.198 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.38, A:R.38 Salt bridges: A:R.38 SO4.5: 3 residues within 4Å: Chain A: G.103 Chain B: K.295, R.299 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.299 Salt bridges: B:K.295, B:R.299 SO4.6: 3 residues within 4Å: Chain B: S.257, E.260, R.263 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.257, B:S.257, B:E.260 Water bridges: B:S.257, B:A.259, B:R.263, B:R.263, B:R.263 Salt bridges: B:R.263 SO4.7: 5 residues within 4Å: Chain B: A.34, R.38, I.196, V.197, P.198 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.38, B:R.38 Salt bridges: B:R.38

4 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.4: 22 residues within 4Å: Chain A: C.86, L.145, H.153, M.154, R.217, S.224, M.225, L.228, F.232, A.240, G.241, S.244, G.245, L.246, M.285, A.315, F.316, H.345, C.375, I.376, G.377 Chain D: M.131 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.232, A:A.240 Hydrogen bonds: A:Q.180, A:R.217, A:R.217, A:S.244, A:G.245 Water bridges: A:Y.215, A:Y.215, A:Y.215, A:L.246 pi-Cation interactions: A:R.217, A:R.217 ACO.8: 22 residues within 4Å: Chain B: C.86, L.145, H.153, M.154, Q.180, R.217, S.224, M.225, F.232, A.240, G.241, S.244, G.245, L.246, M.285, A.315, F.316, H.345, C.375, I.376, G.377 Chain C: M.131 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:Q.180, B:R.217, B:R.217, B:S.224, B:S.244, B:S.244, B:S.244 Water bridges: B:Y.215, B:Y.215, B:T.221, B:T.221, B:L.246 pi-Cation interactions: B:R.217, B:R.217 ACO.9: 23 residues within 4Å: Chain B: M.131 Chain C: C.86, L.145, H.153, M.154, Q.180, R.217, S.224, M.225, L.228, F.232, A.240, G.241, A.243, S.244, G.245, M.285, A.315, F.316, H.345, C.375, I.376, G.377 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:A.240 Hydrogen bonds: C:Q.180, C:R.217, C:R.217, C:S.244, C:S.244, C:L.246 Water bridges: C:G.241 pi-Cation interactions: C:R.217, C:R.217 ACO.10: 24 residues within 4Å: Chain A: M.131 Chain D: C.86, L.145, H.153, M.154, Q.180, R.217, S.224, M.225, L.228, F.232, A.240, G.241, A.243, S.244, G.245, L.246, M.285, A.315, F.316, H.345, C.375, I.376, G.377 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:L.145, D:A.243 Hydrogen bonds: D:Q.180, D:R.217, D:R.217, D:S.224, D:G.241, D:G.245 Water bridges: D:L.246, D:C.375 pi-Cation interactions: D:R.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Modis, Y. et al., Crystallographic analysis of the reaction pathway of Zoogloea ramigera biosynthetic thiolase. J.Mol.Biol. (2000)

Release Date

2001-08-29

Peptides

BIOSYNTHETIC THIOLASE ACETYLATED AT CYS89: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

BIOSYNTHETIC THIOLASE ACETYLATED AT CYS89

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