SMTL ID : 1dmt.2 (1 other biounit)

STRUCTURE OF HUMAN NEUTRAL ENDOPEPTIDASE COMPLEXED WITH PHOSPHORAMIDON

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.91, A.94, D.451 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.91 Water bridges: A:R.98, A:D.451 NAG.2: 4 residues within 4Å: Chain A: K.265, N.271, N.274, E.275 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.274 Hydrogen bonds: A:K.265, A:N.271, A:E.275 NAG.3: 3 residues within 4Å: Chain A: Y.570, G.573, N.574 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.574 NAG.7: 3 residues within 4Å: Chain B: N.91, A.94, D.451 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.91 Water bridges: B:R.98, B:D.451 NAG.8: 4 residues within 4Å: Chain B: K.265, N.271, N.274, E.275 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:N.274 Hydrogen bonds: B:K.265, B:N.271, B:E.275, B:E.275 NAG.9: 3 residues within 4Å: Chain B: Y.570, G.573, N.574 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.574

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: H.530, H.534, E.593, H.658 Ligands: RDF.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.530, A:H.534, A:E.593, A:E.593, RDF.5 ZN.10: 5 residues within 4Å: Chain B: H.530, H.534, E.593, H.658 Ligands: RDF.11 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:H.530, B:H.534, B:E.593, B:E.593, RDF.11

2 x RDF: N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN(Non-covalent)

RDF.5: 19 residues within 4Å: Chain A: R.49, F.53, R.57, V.488, N.489, A.490, F.491, I.505, V.527, H.530, E.531, H.534, E.593, W.640, V.657, H.658, R.664 Ligands: ZN.4, GOL.6 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.53, A:F.53, A:I.505, A:W.640, A:V.657 Hydrogen bonds: A:V.488, A:N.489, A:N.489, A:N.489, A:R.664, A:R.664 Water bridges: A:R.49, A:Y.492, A:E.531, A:D.656 Salt bridges: A:H.658, A:H.658 pi-Stacking: A:F.53 RDF.11: 19 residues within 4Å: Chain B: R.49, F.53, R.57, V.488, N.489, A.490, F.491, I.505, V.527, H.530, E.531, H.534, E.593, W.640, V.657, H.658, R.664 Ligands: ZN.10, GOL.12 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:F.53, B:F.53, B:I.505, B:W.640, B:V.657 Hydrogen bonds: B:V.488, B:N.489, B:N.489, B:N.489, B:R.664, B:R.664 Water bridges: B:R.49, B:Y.492, B:E.531, B:D.656 Salt bridges: B:H.658, B:H.658 pi-Stacking: B:F.53

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: R.49, R.57, N.489, D.656 Ligands: RDF.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.489, A:D.656 Water bridges: A:R.49 GOL.12: 5 residues within 4Å: Chain B: R.49, R.57, N.489, D.656 Ligands: RDF.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.489, B:D.656 Water bridges: B:R.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oefner, C. et al., Structure of human neutral endopeptidase (Neprilysin) complexed with phosphoramidon. J.Mol.Biol. (2000)

Release Date

2000-12-20

Peptides

NEUTRAL ENDOPEPTIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NEUTRAL ENDOPEPTIDASE

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