SMTL ID : 6thp.1 (1 other biounit)

Neprilysin in complex with the inhibitor (R)-4-(1-carboxy-3-(3'-chlorobiphenyl-4-yl)propan-2-ylamino)-4-oxobutanoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

monomer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.91, A.94, D.451 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.91, A:A.94 Water bridges: A:D.451 NAG.2: 4 residues within 4Å: Chain A: K.265, N.271, N.274, E.275 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.275 Hydrogen bonds: A:K.265, A:N.271, A:E.275, A:E.275 NAG.3: 5 residues within 4Å: Chain A: V.569, Y.570, G.573, N.574, H.584 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.574 NAG.4: 2 residues within 4Å: Chain A: N.231, K.300 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.231

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.530, H.534, E.593, H.658 Ligands: N9Q.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.530, A:H.534, A:E.593, A:E.593

1 x N9Q: 4-[[(2~{R})-1-[4-(3-chlorophenyl)phenyl]-4-oxidanyl-4-oxidanylidene-butan-2-yl]amino]-4-oxidanylidene-butanoic acid(Non-covalent)

N9Q.6: 19 residues within 4Å: Chain A: R.49, F.53, R.57, N.489, A.490, M.526, V.527, H.530, E.531, H.534, E.593, D.597, F.636, V.639, W.640, H.658, R.664, I.665 Ligands: ZN.5 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.53, A:V.527, A:H.530, A:F.636, A:F.636, A:V.639, A:V.639, A:W.640, A:I.665 Hydrogen bonds: A:N.489, A:R.664, A:R.664 Water bridges: A:D.656, A:D.656 Salt bridges: A:R.49, A:R.57, A:H.530, A:H.534, A:H.658 pi-Stacking: A:H.530, A:W.640

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawanami, T. et al., Structure-Guided Design of Substituted Biphenyl Butanoic Acid Derivatives as Neprilysin Inhibitors. Acs Med.Chem.Lett. (2020)

Release Date

2020-02-12

Peptides

Neprilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neprilysin

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