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SMTL ID : 1dqx.1
(1 other biounit)
CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE COMPLEXED TO 6-HYDROXYURIDINE 5'-PHOSPHATE (BMP)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
homo-dimer
Ligands
2 x
BMP
:
6-HYDROXYURIDINE-5'-PHOSPHATE
(Non-covalent)
BMP.1:
19 residues within 4Å:
Chain A:
S.35
,
D.37
,
K.59
,
H.61
,
D.91
,
K.93
,
E.152
,
L.153
,
S.154
,
I.183
,
P.202
,
Q.215
,
Y.217
,
V.233
,
G.234
,
R.235
Chain B:
D.96
,
I.97
,
T.100
19
PLIP interactions
:
18 interactions with chain A
,
1 interactions with chain B
Hydrophobic interactions:
A:I.183
,
A:P.202
Hydrogen bonds:
A:S.35
,
A:D.37
,
A:K.59
,
A:H.61
,
A:D.91
,
A:K.93
,
A:S.154
,
A:S.154
,
A:Y.217
,
A:Y.217
,
A:G.234
,
A:R.235
,
B:T.100
Water bridges:
A:D.37
,
A:D.37
,
A:G.203
Salt bridges:
A:R.235
BMP.2:
18 residues within 4Å:
Chain A:
D.96
,
I.97
,
T.100
Chain B:
S.35
,
D.37
,
K.59
,
H.61
,
D.91
,
K.93
,
E.152
,
L.153
,
S.154
,
I.183
,
P.202
,
Q.215
,
Y.217
,
G.234
,
R.235
19
PLIP interactions
:
18 interactions with chain B
,
1 interactions with chain A
Hydrophobic interactions:
B:I.183
,
B:P.202
Hydrogen bonds:
B:S.35
,
B:D.37
,
B:D.37
,
B:K.59
,
B:H.61
,
B:D.91
,
B:K.93
,
B:S.154
,
B:S.154
,
B:Y.217
,
B:Y.217
,
B:G.234
,
B:R.235
,
A:T.100
Water bridges:
B:R.235
,
B:G.236
Salt bridges:
B:R.235
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Miller, B.G. et al., Anatomy of a proficient enzyme: the structure of orotidine 5'-monophosphate decarboxylase in the presence and absence of a potential transition state analog. Proc.Natl.Acad.Sci.USA (2000)
Release Date
2000-03-20
Peptides
OROTIDINE 5'-PHOSPHATE DECARBOXYLASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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OROTIDINE 5'-PHOSPHATE DECARBOXYLASE
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Related Entries With Identical Sequence
1dqw.1
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1dqw.2
|
1dqx.2
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