SMTL ID : 1dqx.2 (1 other biounit)

CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE COMPLEXED TO 6-HYDROXYURIDINE 5'-PHOSPHATE (BMP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x BMP: 6-HYDROXYURIDINE-5'-PHOSPHATE(Non-covalent)

BMP.1: 18 residues within 4Å: Chain A: S.35, D.37, K.59, H.61, D.91, K.93, E.152, L.153, S.154, I.183, P.202, Q.215, Y.217, G.234, R.235 Chain B: D.96, I.97, T.100 21 PLIP interactions: 19 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.183, A:P.202 Hydrogen bonds: A:S.35, A:D.37, A:K.59, A:H.61, A:D.91, A:K.93, A:S.154, A:S.154, A:S.154, A:G.203, A:Y.217, A:Y.217, A:G.234, A:R.235, B:T.100 Water bridges: A:D.37, A:G.236, B:T.100 Salt bridges: A:R.235 BMP.2: 18 residues within 4Å: Chain A: D.96, I.97, T.100 Chain B: S.35, D.37, K.59, H.61, D.91, K.93, E.152, L.153, S.154, I.183, P.202, Q.215, Y.217, G.234, R.235 20 PLIP interactions: 18 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.183, B:P.202 Hydrogen bonds: B:S.35, B:D.37, B:D.37, B:K.59, B:H.61, B:D.91, B:K.93, B:S.154, B:S.154, B:S.154, B:Y.217, B:Y.217, B:G.234, B:R.235, A:T.100 Water bridges: B:G.203, A:T.100 Salt bridges: B:R.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, B.G. et al., Anatomy of a proficient enzyme: the structure of orotidine 5'-monophosphate decarboxylase in the presence and absence of a potential transition state analog. Proc.Natl.Acad.Sci.USA (2000)

Release Date

2000-03-20

Peptides

OROTIDINE 5'-PHOSPHATE DECARBOXYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

OROTIDINE 5'-PHOSPHATE DECARBOXYLASE

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