SMTL ID : 1ds1.1

CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II) AND 2-OXOGLUTARATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.08 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: L.20, P.21, R.22 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.22 Water bridges: A:L.20, A:T.23, A:T.23 SO4.2: 3 residues within 4Å: Chain A: T.2, S.58, E.59 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.59 Water bridges: A:T.2, A:T.2, A:E.59, A:E.59 SO4.3: 3 residues within 4Å: Chain A: R.151, R.323, G.324 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.324, A:G.324 Water bridges: A:R.323 Salt bridges: A:R.151, A:R.323 SO4.4: 5 residues within 4Å: Chain A: L.114, R.115, S.133, S.134, R.297 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.134, A:S.134 Salt bridges: A:R.115, A:R.297

1 x FE2: FE (II) ION(Non-covalent)

FE2.5: 4 residues within 4Å: Chain A: H.144, E.146, H.279 Ligands: AKG.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.144, A:E.146, A:H.279, H2O.4

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.6: 12 residues within 4Å: Chain A: V.123, L.141, H.144, E.146, L.159, T.172, H.279, R.281, R.293, L.295, R.297 Ligands: FE2.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.141, A:L.159 Hydrogen bonds: A:T.172 Water bridges: A:R.281 Salt bridges: A:H.279, A:R.293, A:R.297

2 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.7: 7 residues within 4Å: Chain A: A.17, A.18, R.22, E.71, L.91, L.92, T.93 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.22, A:R.22 Water bridges: A:R.14, A:T.93 PGO.8: 5 residues within 4Å: Chain A: N.54, A.55, T.302, D.303, R.304 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.303 Hydrogen bonds: A:N.54, A:N.54 Water bridges: A:D.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase. Nat.Struct.Biol. (2000)

Release Date

2000-07-06

Peptides

CLAVAMINATE SYNTHASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CLAVAMINATE SYNTHASE 1

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