SMTL ID : 1gvg.1

Crystal Structure of Clavaminate Synthase with Nitric Oxide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.144, E.146, H.279 Ligands: AKG.2, HOA.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.144, A:E.146, A:H.279, HOA.7

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 14 residues within 4Å: Chain A: S.134, L.141, H.144, E.146, L.159, T.172, H.279, R.281, R.293, L.295, R.297 Ligands: FE.1, PCX.6, HOA.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.141, A:L.159 Water bridges: A:R.281 Salt bridges: A:H.144, A:R.293, A:R.297

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: P.21, R.22 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.22 Water bridges: A:T.23, A:T.23 Salt bridges: A:R.22 SO4.4: 3 residues within 4Å: Chain A: T.2, S.58, E.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.59, A:E.59 SO4.5: 4 residues within 4Å: Chain A: R.151, R.196, R.323, G.324 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.324, A:G.324 Water bridges: A:R.196, A:R.196, A:R.323, A:R.323 Salt bridges: A:R.151, A:R.196, A:R.323

1 x PCX: DEOXYGUANIDINOPROCLAVAMINIC ACID(Non-covalent)

PCX.6: 13 residues within 4Å: Chain A: L.114, L.132, S.133, S.134, H.144, E.146, D.202, D.233, E.235, L.236, R.297, Y.299 Ligands: AKG.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.146 Hydrogen bonds: A:L.132, A:S.134 Water bridges: A:R.115, A:R.115, A:E.142, A:H.144, A:Y.149, A:Y.149 Salt bridges: A:D.202, A:D.233, A:R.297

1 x HOA: HYDROXYAMINE(Non-covalent)

HOA.7: 7 residues within 4Å: Chain A: E.146, V.157, L.159, H.279, R.297 Ligands: FE.1, AKG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z.H. et al., Crystal Structure of a Clavaminate Synthase-Fe(II) -2-Oxoglutarate-Substrate-No Complex: Evidence for Metal Centered Rearrangements. FEBS Lett. (2002)

Release Date

2003-02-07

Peptides

CLAVAMINATE SYNTHASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CLAVAMINATE SYNTHASE 1

Related Entries With Identical Sequence