SMTL ID : 1dud.1

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDE HYDROLASE (D-UTPASE) COMPLEXED WITH THE SUBSTRATE ANALOGUE DEOXYURIDINE 5'-DIPHOSPHATE (D-UDP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

3 x DUD: DEOXYURIDINE-5'-DIPHOSPHATE(Non-covalent)

DUD.1: 14 residues within 4Å: Chain A: M.68, N.84, G.87, L.88, I.89, D.90, Y.93, Q.96, L.97, M.98 Chain C: R.71, S.72, G.73, Q.119 13 PLIP interactions: 6 interactions with chain C, 7 interactions with chain A Hydrogen bonds: C:S.72, C:S.72, C:G.73, C:Q.119, A:N.84, A:D.90, A:M.98, A:M.98 Water bridges: C:Q.119, A:L.88 Salt bridges: C:R.71 Hydrophobic interactions: A:I.89, A:Y.93 DUD.2: 14 residues within 4Å: Chain A: R.71, S.72, G.73, Q.119 Chain B: M.68, N.84, G.87, L.88, I.89, D.90, Y.93, Q.96, L.97, M.98 13 PLIP interactions: 7 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:I.89, B:Y.93 Hydrogen bonds: B:N.84, B:D.90, B:M.98, B:M.98, A:S.72, A:S.72, A:G.73, A:Q.119 Water bridges: B:L.88, A:Q.119 Salt bridges: A:R.71 DUD.3: 14 residues within 4Å: Chain B: R.71, S.72, G.73, Q.119 Chain C: M.68, N.84, G.87, L.88, I.89, D.90, Y.93, Q.96, L.97, M.98 13 PLIP interactions: 7 interactions with chain C, 6 interactions with chain B Hydrophobic interactions: C:I.89, C:Y.93 Hydrogen bonds: C:N.84, C:D.90, C:M.98, C:M.98, B:S.72, B:S.72, B:G.73, B:Q.119 Water bridges: C:L.88, B:Q.119 Salt bridges: B:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larsson, G. et al., Crystal structure of the Escherichia coli dUTPase in complex with a substrate analogue (dUDP). Nat.Struct.Biol. (1996)

Release Date

1996-11-08

Peptides

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE

Related Entries With Identical Sequence