SMTL ID : 1eu5.1

STRUCTURE OF E. COLI DUTPASE AT 1.45 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-trimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: L.50, M.98, S.100 Chain B: S.72, H.76 Ligands: GOL.2 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:N.84, A:S.100, B:S.72, B:S.72 Hydrogen bonds: B:S.72 GOL.2: 6 residues within 4Å: Chain A: L.88, Y.93, Q.96, L.97, M.98 Ligands: GOL.1 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.93, A:M.98, A:M.98 Water bridges: A:L.88, B:S.72, B:S.72, B:S.72 GOL.3: 6 residues within 4Å: Chain B: L.50, M.98, S.100 Chain C: S.72, H.76 Ligands: GOL.4 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:S.72 Water bridges: C:S.72, C:S.72, B:N.84, B:S.100 GOL.4: 6 residues within 4Å: Chain B: L.88, Y.93, Q.96, L.97, M.98 Ligands: GOL.3 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain B Water bridges: C:S.72, C:S.72, C:S.72, B:L.88 Hydrogen bonds: B:Y.93, B:M.98, B:M.98 GOL.5: 6 residues within 4Å: Chain A: S.72, H.76 Chain C: L.50, M.98, S.100 Ligands: GOL.6 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain A Water bridges: C:N.84, C:S.100, A:S.72, A:S.72 Hydrogen bonds: A:S.72 GOL.6: 6 residues within 4Å: Chain C: L.88, Y.93, Q.96, L.97, M.98 Ligands: GOL.5 7 PLIP interactions: 4 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:Y.93, C:M.98, C:M.98 Water bridges: C:L.88, A:S.72, A:S.72, A:S.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez, A. et al., Atomic resolution structure of Escherichia coli dUTPase determined ab initio. Acta Crystallogr.,Sect.D (2001)

Release Date

2000-05-03

Peptides

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE

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