SMTL ID : 1e2p.1

Thymidine kinase, DHBT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: H.13, G.14, M.15, G.16, K.17, T.18, R.175, R.177 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.14, A:M.15, A:G.16, A:K.17, A:T.18, A:T.18 Salt bridges: A:K.17, A:R.175, A:R.177 SO4.3: 6 residues within 4Å: Chain B: H.13, G.14, M.15, G.16, K.17, T.18 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.14, B:M.15, B:G.16, B:K.17, B:T.18 Salt bridges: B:K.17

2 x CCV: 6-[3-HYDROXY-2-(HYDROXYMETHYL)PROPYL]-5-METHYL-2,4(1H,3H)-PYRIMIDINEDIONE(Non-covalent)

CCV.2: 13 residues within 4Å: Chain A: H.13, E.38, W.43, I.55, Y.56, Q.80, M.83, Y.87, R.118, A.122, A.123, Y.127, R.177 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.127, A:Y.127 Hydrogen bonds: A:E.38, A:Y.56, A:Q.80, A:Q.80, A:R.118 Water bridges: A:Y.56, A:R.131, A:R.131 pi-Stacking: A:Y.127 CCV.4: 10 residues within 4Å: Chain B: H.13, E.38, I.55, Y.56, Q.80, M.83, Y.87, R.118, A.123, Y.127 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.127, B:Y.127 Hydrogen bonds: B:E.38, B:E.38, B:Y.56, B:Y.56, B:Q.80, B:Q.80, B:R.118 Water bridges: B:Y.56, B:R.131, B:R.131 pi-Stacking: B:Y.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wurth, C. et al., The Effect of Substrate Binding on the Conformation and Structural Stability of Herpes Simplex Virus Type 1 Thymidine Kinase. Protein Sci. (2001)

Release Date

2001-04-26

Peptides

THYMIDINE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

THYMIDINE KINASE

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