SMTL ID : 1eil.1

2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-octamer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.20, F.21, S.25, A.230, R.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.25 Water bridges: A:H.20, A:R.232 Salt bridges: A:H.20, A:R.232 SO4.3: 5 residues within 4Å: Chain B: H.20, F.21, S.25, A.230, R.232 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.25 Water bridges: B:H.20, B:R.232 Salt bridges: B:H.20, B:R.232 SO4.5: 5 residues within 4Å: Chain C: H.20, F.21, S.25, A.230, R.232 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.25 Water bridges: C:H.20, C:R.232 Salt bridges: C:H.20, C:R.232 SO4.7: 5 residues within 4Å: Chain D: H.20, F.21, S.25, A.230, R.232 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.25 Water bridges: D:H.20, D:R.232 Salt bridges: D:H.20, D:R.232 SO4.9: 5 residues within 4Å: Chain E: H.20, F.21, S.25, A.230, R.232 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:S.25 Water bridges: E:H.20, E:R.232 Salt bridges: E:H.20, E:R.232 SO4.11: 5 residues within 4Å: Chain F: H.20, F.21, S.25, A.230, R.232 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:S.25 Water bridges: F:H.20, F:R.232 Salt bridges: F:H.20, F:R.232 SO4.13: 5 residues within 4Å: Chain G: H.20, F.21, S.25, A.230, R.232 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:S.25 Water bridges: G:H.20, G:R.232 Salt bridges: G:H.20, G:R.232 SO4.15: 5 residues within 4Å: Chain H: H.20, F.21, S.25, A.230, R.232 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:S.25 Water bridges: H:H.20, H:R.232 Salt bridges: H:H.20, H:R.232

8 x FE: FE (III) ION(Non-covalent)

FE.2: 4 residues within 4Å: Chain A: H.145, H.209, Y.249, E.260 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.145, A:H.209, A:E.260, H2O.3, H2O.8 FE.4: 4 residues within 4Å: Chain B: H.145, H.209, Y.249, E.260 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.145, B:H.209, B:E.260, H2O.11, H2O.15 FE.6: 4 residues within 4Å: Chain C: H.145, H.209, Y.249, E.260 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.145, C:H.209, C:E.260, H2O.18, H2O.23 FE.8: 4 residues within 4Å: Chain D: H.145, H.209, Y.249, E.260 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.145, D:H.209, D:E.260, H2O.26, H2O.30 FE.10: 4 residues within 4Å: Chain E: H.145, H.209, Y.249, E.260 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.145, E:H.209, E:E.260, H2O.33, H2O.38 FE.12: 4 residues within 4Å: Chain F: H.145, H.209, Y.249, E.260 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:H.145, F:H.209, F:E.260, H2O.40, H2O.45 FE.14: 4 residues within 4Å: Chain G: H.145, H.209, Y.249, E.260 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.145, G:H.209, G:E.260, H2O.48, H2O.52 FE.16: 4 residues within 4Å: Chain H: H.145, H.209, Y.249, E.260 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:H.145, H:H.209, H:E.260, H2O.55, H2O.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Uragami, Y. et al., Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase. J.Inorg.Biochem. (2001)

Release Date

2001-02-26

Peptides

2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE

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